Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PARA_RS04090 Genome accession   NC_015964
Coordinates   800661..802190 (-) Length   509 a.a.
NCBI ID   WP_014064660.1    Uniprot ID   A0AB33QJ23
Organism   Haemophilus parainfluenzae T3T1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 795661..807190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS04060 (PARA_08060) - 796392..796904 (+) 513 WP_014064654.1 hypothetical protein -
  PARA_RS04065 (PARA_08070) - 796901..797443 (+) 543 WP_014064655.1 hypothetical protein -
  PARA_RS04070 (PARA_08080) - 797443..797826 (+) 384 WP_014064656.1 pilus assembly protein PilP -
  PARA_RS04075 (PARA_08090) comE 797828..799210 (+) 1383 WP_014064657.1 type IV pilus secretin PilQ Machinery gene
  PARA_RS04080 (PARA_08100) - 799230..799919 (+) 690 WP_014064658.1 ComF family protein -
  PARA_RS04085 (PARA_08110) nfuA 800033..800617 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -
  PARA_RS04090 (PARA_08120) comM 800661..802190 (-) 1530 WP_014064660.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PARA_RS04095 (PARA_08130) yihA 802320..802934 (-) 615 WP_014064661.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PARA_RS04100 (PARA_08140) - 803047..803916 (+) 870 WP_014064662.1 VirK/YbjX family protein -
  PARA_RS04105 (PARA_08150) oppF 803957..804955 (-) 999 WP_014064663.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  PARA_RS04110 (PARA_08160) - 804952..805923 (-) 972 WP_014064664.1 ABC transporter ATP-binding protein -
  PARA_RS04115 (PARA_08170) oppC 805932..806867 (-) 936 WP_014064665.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55782.21 Da        Isoelectric Point: 9.7523

>NTDB_id=42241 PARA_RS04090 WP_014064660.1 800661..802190(-) (comM) [Haemophilus parainfluenzae T3T1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDDSRLKQFEFVGELALTGELRGVHGVIPAILAAQRAKRAPIIAYQNANEASLVSEQETYFAKNL
LEVVQFLNNQEKLPLASLLAQESSVGFSAKNHLDLTDIIGQQHAKRVLTIAAAGQHNLLFLGPPGTGKTMLASRLTALLP
EMTDLEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSQQVREKVLKVRAIQLARAGKINAYLSSKEIERDCKLQDKDAQFLENALNKLGLSVRAYHRILKVSRTIADLN
GEKEILQPHLAEALGYRAMDRLLQKLSAA

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=42241 PARA_RS04090 WP_014064660.1 800661..802190(-) (comM) [Haemophilus parainfluenzae T3T1]
ATGTCTCTTGCTATTGTTTACAGCCGTGCATCGATGGGTGTACAAGCCCCTCTTGTTACGATTGAAGTACATTTAAGTAA
CGGGAAGCCTGGATTTACCTTAGTTGGTCTACCCGAAAAAACTGTAAAAGAAGCGCAAGATCGTGTCAGAAGTGCGTTAA
TGAATGCCCAGTTCAAATATCCTGCTAAACGCATCACCGTCAACCTTGCACCAGCTGATTTACCCAAAGAAGGAGGGAGA
TTTGATTTACCTATTGCAATAGGTATTTTAGCTGCATCGGATCAACTCGACGATAGCCGTTTAAAACAATTTGAATTCGT
TGGCGAACTCGCATTAACAGGTGAATTACGTGGTGTACATGGCGTGATCCCCGCCATTTTAGCGGCACAAAGAGCGAAAC
GAGCCCCCATTATCGCTTATCAAAATGCTAATGAGGCGTCACTTGTCTCAGAGCAAGAGACTTATTTTGCTAAAAACCTT
TTGGAAGTCGTGCAATTCTTAAATAATCAAGAAAAATTACCTTTGGCTTCATTACTTGCACAAGAAAGTTCGGTCGGATT
TTCAGCTAAAAATCACTTAGATTTGACGGATATTATTGGTCAGCAACATGCTAAACGAGTCCTAACAATTGCGGCTGCAG
GTCAACATAATCTGCTCTTTTTAGGCCCACCAGGGACAGGTAAAACTATGTTGGCAAGTCGTCTCACTGCATTACTCCCA
GAAATGACTGATTTAGAAGCCATTGAAACCGCTTCGGTCACAAGCTTAGTACAAAATGAATTAAATTTTCAGAACTGGAA
ACAACGTCCATTTCGAGCGCCACATCATAGTGCTTCTTTGCCTGCATTAGTGGGTGGAGGAACCATTCCAAAACCAGGCG
AAATATCGCTCGCACATAATGGTGTACTTTTTCTTGATGAGCTACCTGAATTTGAGCGTAAAGTACTGGACGCTCTACGA
CAACCCTTAGAAAGTGGAGAAATTATTATTTCGCGTGCCAATGCAAAAATCCAATTTCCTGCTCGCTTTCAACTCGTTGC
GGCGATGAATCCAAGTCCAACGGGGCATTATACCGGAACACATAATCGTACCTCGCCACAACAAGTGATGCGTTATTTAA
ATCGCCTTTCAGGACCATTTTTAGATCGCTTTGATCTATCCATTGAAGTGCCTCTTCTGCCGCAAGGTAGTCTACAAAAT
ACAGGGGATAGAGGTGAAACCAGCCAACAAGTAAGAGAAAAAGTATTAAAAGTGAGAGCGATTCAACTTGCTCGAGCCGG
TAAAATTAATGCATATCTTTCAAGCAAAGAAATTGAACGAGACTGTAAATTACAAGATAAAGATGCACAATTTTTAGAGA
ATGCTTTAAATAAACTCGGACTTTCAGTAAGAGCCTATCATCGGATTTTAAAAGTCTCACGTACAATTGCCGATTTGAAT
GGCGAAAAAGAGATACTACAACCCCATTTAGCAGAAGCACTAGGATATCGAGCGATGGATCGGTTGTTACAGAAATTATC
TGCCGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

91.519

99.607

0.912
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

66.732

99.804

0.666
  comM Vibrio campbellii strain DS40M4

65.422

100

0.654
  comM Legionella pneumophila str. Paris

51.587

99.018

0.511
  comM Legionella pneumophila strain ERS1305867

51.587

99.018

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.602

100

0.472

Multiple sequence alignment