Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KO11_RS13825 Genome accession   NC_017660
Coordinates   2813519..2814175 (+) Length   218 a.a.
NCBI ID   WP_000611337.1    Uniprot ID   -
Organism   Escherichia coli KO11FL     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2808519..2819175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO11_RS13795 (KO11_13130) dcyD 2809399..2810385 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  KO11_RS13800 (KO11_13135) tcyL 2810400..2811068 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KO11_RS13805 (KO11_13140) tcyN 2811065..2811817 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KO11_RS13810 (KO11_13145) sdiA 2812047..2812769 (+) 723 WP_001154279.1 transcriptional regulator SdiA -
  KO11_RS13815 (KO11_13150) yecF 2812836..2813060 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KO11_RS27780 (KO11_13155) yecU 2813047..2813223 (-) 177 WP_000590347.1 protein YecU -
  KO11_RS28730 - 2813306..2813377 (-) 72 Protein_2633 transcriptional regulator -
  KO11_RS13825 (KO11_13160) letA 2813519..2814175 (+) 657 WP_000611337.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KO11_RS13830 (KO11_13165) uvrC 2814172..2816004 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  KO11_RS13835 (KO11_13170) pgsA 2816061..2816609 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KO11_RS13855 (KO11_13175) yecA 2817258..2817923 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23922.68 Da        Isoelectric Point: 6.9614

>NTDB_id=42239 KO11_RS13825 WP_000611337.1 2813519..2814175(+) (letA) [Escherichia coli KO11FL]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLETTRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=42239 KO11_RS13825 WP_000611337.1 2813519..2814175(+) (letA) [Escherichia coli KO11FL]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGACGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486

Multiple sequence alignment