Detailed information NTG0042239

Bioinformatically predicted

Overview

• Name: comE
• Type: Machinery gene
• Locus tag: PARA_RS04075
• Genome accession: NC_015964
• Coordinates: 797828..799210 (+)
• Length: 460 a.a.
• NCBI ID: WP_014064657.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae T3T1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 792828..804210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PARA_RS10515	-	792839..793531 (-)	693	Protein_798	penicillin-binding protein 1A	-
PARA_RS04050 (PARA_08040)	-	793607..795457 (-)	1851	Protein_799	penicillin-binding protein 1A	-
PARA_RS04055 (PARA_08050)	-	795557..796399 (+)	843	WP_014064653.1	hypothetical protein	-
PARA_RS04060 (PARA_08060)	-	796392..796904 (+)	513	WP_014064654.1	hypothetical protein	-
PARA_RS04065 (PARA_08070)	-	796901..797443 (+)	543	WP_014064655.1	hypothetical protein	-
PARA_RS04070 (PARA_08080)	-	797443..797826 (+)	384	WP_014064656.1	pilus assembly protein PilP	-
PARA_RS04075 (PARA_08090)	comE	797828..799210 (+)	1383	WP_014064657.1	type IV pilus secretin PilQ	Machinery gene
PARA_RS04080 (PARA_08100)	-	799230..799919 (+)	690	WP_014064658.1	ComF family protein	-
PARA_RS04085 (PARA_08110)	nfuA	800033..800617 (+)	585	WP_014064659.1	Fe-S biogenesis protein NfuA	-
PARA_RS04090 (PARA_08120)	comM	800661..802190 (-)	1530	WP_014064660.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PARA_RS04095 (PARA_08130)	yihA	802320..802934 (-)	615	WP_014064661.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
PARA_RS04100 (PARA_08140)	-	803047..803916 (+)	870	WP_014064662.1	VirK/YbjX family protein	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 51070.78 Da
• Isoelectric Point: 7.1773

>NTDB_id=42239 PARA_RS04075 WP_014064657.1 797828..799210(+) (comE) [Haemophilus parainfluenzae T3T1]
MVKQKIKTKCGQFLMCFLILWTTYSAAENRIFSLRLKQAPMVATLQQLALEQNTNLMIDDELEGTLSLQLDSVDFDRLLR
SVAKIKGLSFYQEKDIYYLGKPSQHEQYAEKMVEPMTISGESLPSETPLVSATVKLHFAKAADVMKSLTTGSGSLLSPSG
TITFDDRSNVLLIQDDARSVKNIKKLIAELDKPIEQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFS
NIGDNLNVNFATTVTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVTNGKNDT
QSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGI
DKVPLLGDIPGIKRLFSKESERHQKRELVIFVTPHILKQGERMEMAKKEKHFKQVEKVKK

Nucleotide

• Length: 1383 bp

>NTDB_id=42239 PARA_RS04075 WP_014064657.1 797828..799210(+) (comE) [Haemophilus parainfluenzae T3T1]
ATGGTAAAGCAGAAAATAAAAACAAAGTGCGGTCAGTTTTTAATGTGTTTTTTGATCCTATGGACAACTTACTCAGCGGC
AGAAAATCGCATATTTTCACTTCGCTTAAAACAGGCGCCAATGGTGGCGACACTCCAGCAACTTGCTCTTGAGCAAAATA
CCAATTTAATGATTGATGATGAATTAGAAGGAACACTTTCATTACAATTAGATAGCGTCGATTTTGATCGTTTATTGCGT
TCTGTCGCAAAAATCAAAGGGCTCTCTTTTTATCAAGAAAAGGATATTTATTATTTGGGTAAGCCTTCTCAACATGAACA
ATATGCAGAGAAAATGGTAGAACCGATGACGATTAGCGGAGAAAGTTTGCCTAGTGAAACACCACTTGTGAGTGCAACGG
TTAAACTGCATTTTGCCAAGGCCGCTGATGTGATGAAATCGTTAACAACAGGGAGTGGTTCTTTGCTTTCACCTAGCGGC
ACAATTACATTTGATGACCGAAGCAATGTGTTACTGATTCAGGATGATGCACGTTCTGTCAAAAATATTAAAAAATTGAT
TGCAGAGCTGGATAAACCCATTGAGCAAATTGTCATTGAAGCACGTATTGTGACGATTACCGATGAAAGCCTAAAAGAAT
TAGGTGTGCGTTGGGGTATTTTTAATCCTACTGAGGCTGCTCATCGAGTGAGTGGCAGTCTAGATGCGAATGGCTTTAGT
AATATCGGTGATAATTTAAACGTGAATTTTGCGACAACGGTCACGCCAGCTGGCTCATTAGCACTTCAAGTGGCTAAAAT
TAATGGTCGATTATTAGATTTAGAATTGACCGCACTTGAACGTGAAAATAACGTAGAAATTATTGCAAGCCCTCGTTTAC
TCACAACTAATAAGAAAAGCGCAAGCATTAAACAAGGGACAGAAATTCCTTATGTAGTGACAAATGGTAAAAATGATACA
CAGTCAGTAGAGTTTCGCGAGGCAGTCTTAGGATTGGAAGTCACACCACATATTTCGAAGGATAATAATATTTTATTGGA
TTTATTAGTCAGTCAAAATTCCCCGGGAAATCGCGTGGCTTACGGGCAAAATGAAGTGGTGTCCATTGATAAACAAGAAA
TTAATACACAAGTTTTTGCCAAAGATGGCGAAACAATTGTATTGGGAGGGGTATTCCACGACACAATCACGAAAGGTATC
GATAAAGTACCATTATTGGGCGATATTCCCGGTATTAAGCGTCTATTTAGTAAGGAAAGTGAACGACATCAAAAACGCGA
ACTCGTTATTTTTGTGACCCCTCATATTTTGAAACAAGGTGAAAGAATGGAAATGGCTAAGAAAGAAAAGCATTTTAAGC
AAGTTGAAAAAGTGAAAAAATAA

Domains

Predicted by InterproScan.

• Bacterial type II/III secretion system short domain (Secretin_N) (132-196)

• Bacterial type II and III secretion system protein (Secretin) (278-438)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comE	Haemophilus influenzae Rd KW20	73.274	97.609	0.715
comE	Haemophilus influenzae 86-028NP	72.383	97.609	0.707
comE	Glaesserella parasuis strain SC1401	53.428	91.957	0.491
pilQ	Vibrio campbellii strain DS40M4	41.204	93.913	0.387
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	41.038	92.174	0.378
pilQ	Vibrio cholerae strain A1552	41.038	92.174	0.378