Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   G3T13_RS07010 Genome accession   NZ_CP048686
Coordinates   1452804..1454576 (-) Length   590 a.a.
NCBI ID   WP_061773761.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447804..1459576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS06990 - 1448955..1449311 (-) 357 WP_061773765.1 hypothetical protein -
  G3T13_RS06995 - 1449376..1449783 (-) 408 WP_061773764.1 hypothetical protein -
  G3T13_RS07000 - 1450057..1450803 (-) 747 WP_163604801.1 tyrosine-protein phosphatase -
  G3T13_RS07005 rcrQ 1450939..1452804 (-) 1866 WP_061773762.1 ABC transporter ATP-binding protein Regulator
  G3T13_RS07010 rcrP 1452804..1454576 (-) 1773 WP_061773761.1 ABC transporter ATP-binding protein Regulator
  G3T13_RS07015 - 1454647..1455102 (-) 456 WP_061773760.1 MarR family winged helix-turn-helix transcriptional regulator -
  G3T13_RS07020 - 1455253..1456443 (-) 1191 WP_061773759.1 iron-containing alcohol dehydrogenase -
  G3T13_RS07025 - 1456696..1458363 (-) 1668 WP_061773758.1 glycoside hydrolase family 43 protein -
  G3T13_RS07030 - 1458578..1459411 (-) 834 WP_061773757.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64855.43 Da        Isoelectric Point: 9.0892

>NTDB_id=422288 G3T13_RS07010 WP_061773761.1 1452804..1454576(-) (rcrP) [Lactococcus raffinolactis strain KACC 13441]
MLKILKKITGKELRYVGISLIFIVIQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDEGRWMVLCAFGSLVAAVIVGFFAA
KVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMIVAMGLQLSIKAPITAVWAIMKIANKSWEWTTA
LGAAVLFLLVMISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIRVVRAYNAQKYQTDKFEKANDDITSTNLFIQRAMAF
MMPMMSLVSSGLSVAVYLIGATIIKAASVGTPANSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMFPRANVSAGRINE
VIDTASSIKNGTKDGSAAKEVGTVEFKNVYFQYADASEHVLEGVSFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKEYTEEALHDKMGFIPQKPVMFNGTIRSNLAFGTNAHGDMSDEDLMAAARIAQAEEFILKNPEGLNAEVSQ
GGLNLSGGQKQRLAIARAIARKPEILVFDDSFSALDYKTDRVLRDTLKRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGRGTHDELMASNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=422288 G3T13_RS07010 WP_061773761.1 1452804..1454576(-) (rcrP) [Lactococcus raffinolactis strain KACC 13441]
ATGCTTAAAATCTTAAAAAAAATCACTGGAAAAGAGCTCAGATACGTCGGTATCAGCTTGATTTTCATTGTCATCCAGGT
GTATTTAGACCTTAAATTACCGGATTACATGAGCAAAGTGACCAAATTAATCCAAGAAAAAGGCACAACCGTGTCGCAAA
TCTTTGATGAAGGTCGCTGGATGGTCCTCTGTGCCTTTGGCTCACTCGTCGCCGCAGTCATTGTCGGCTTCTTTGCTGCC
AAGGTAGCCGCTGGCTTATCACGGACGCTGCGTCATGATGTCTACCATCAAGTCTCAGAGTATTCAATGGCTGAAATCAA
CCAGTTTTCAACTGCCAGCCTGATTACCCGTTCGACCAACGACATTACTCAAGTCCAAATGATCGTGGCTATGGGGCTAC
AACTCAGTATCAAAGCACCGATTACTGCCGTTTGGGCTATCATGAAAATTGCCAACAAATCATGGGAATGGACGACTGCT
TTAGGTGCTGCTGTTCTCTTCCTTCTCGTCATGATCAGTATTATCGTGACGCTTGCCATGCCACGCTTCAAGATTATCCA
AAAATTAACGGATAAACTAAATTCCGTGACCCGTGAAAACCTGACTGGGATTCGTGTGGTCCGTGCTTATAACGCTCAAA
AATATCAAACTGATAAATTTGAAAAAGCCAACGACGATATTACGTCAACCAACCTCTTCATTCAACGCGCAATGGCCTTC
ATGATGCCCATGATGTCTCTTGTGTCATCTGGCCTGTCAGTTGCCGTTTACTTGATTGGTGCGACCATTATTAAAGCTGC
AAGCGTTGGGACACCTGCTAATTCACCTCGGATCAATCTCTTTTCAGACATGGTCGTGTTCACGTCTTATGGAATGCAAG
TTGTGATGGCCTTTATGATGTTGACCATGATTTTCATCATGTTCCCGCGTGCCAATGTCTCTGCTGGTCGGATTAATGAA
GTCATCGATACCGCCTCAAGCATTAAAAACGGGACAAAAGATGGTTCAGCAGCTAAAGAAGTTGGGACTGTCGAGTTTAA
GAACGTCTATTTCCAATACGCTGATGCCTCTGAACACGTTCTTGAAGGTGTTTCTTTCAAGGCCAATAAAGGCGAAACGG
TTGCCTTCATCGGCTCAACCGGTTCTGGTAAATCAACATTAATCAACCTCATCCCGCGTTACTATGATGTGACAGCCGGT
CAAGTCTTGGTTGATGGCGTCAATGTTAAGGAATATACAGAAGAAGCCTTGCACGATAAAATGGGTTTCATCCCGCAAAA
ACCAGTGATGTTTAACGGAACGATTCGGTCAAACTTGGCCTTTGGGACTAATGCTCATGGTGACATGAGTGATGAAGACT
TAATGGCAGCTGCACGGATCGCCCAAGCTGAAGAATTTATACTGAAAAACCCTGAAGGCTTAAACGCTGAAGTATCTCAG
GGTGGTCTTAACCTGTCCGGTGGTCAAAAGCAACGGCTAGCGATTGCTCGTGCCATTGCCCGCAAGCCTGAAATTCTCGT
CTTTGATGACAGTTTTTCAGCTTTGGACTATAAGACTGACCGTGTCTTACGCGATACCTTGAAACGTGAAACAGCAGAAA
CGACGAAACTGATTGTTGCCCAACGGATTGGCACGATTATCGATGCCGATCAAATTATTGTTTTGGATAAAGGGAAAGTC
GTGGGTCGTGGGACACATGATGAGTTGATGGCTAGCAATGAAGTCTATCAAGAAATCGCCTATTCACAACTGTCTAAGGA
GGAATTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-511)

ABC transporter transmembrane region (ABC_membrane)

(17-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.017

100

0.558

Multiple sequence alignment