Detailed information NTG0421686

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: G3M68_RS03390
• Genome accession: NZ_CP048600
• Coordinates: 725421..726404 (-)
• Length: 327 a.a.
• NCBI ID: WP_163497925.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 43
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 720421..731404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M68_RS03370 (G3M68_03370)	-	720699..721631 (-)	933	WP_163497923.1	GDP-L-fucose synthase	-
G3M68_RS03375 (G3M68_03375)	gmd	721624..722769 (-)	1146	WP_163497924.1	GDP-mannose 4,6-dehydratase	-
G3M68_RS03380 (G3M68_03380)	-	722810..724222 (-)	1413	WP_097702464.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M68_RS03385 (G3M68_03385)	comB10	724292..725428 (-)	1137	WP_097702463.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M68_RS03390 (G3M68_03390)	comB9	725421..726404 (-)	984	WP_163497925.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M68_RS03395 (G3M68_03395)	comB8	726404..727147 (-)	744	WP_163497926.1	virB8 family protein	Machinery gene
G3M68_RS03400 (G3M68_03400)	comB7	727144..727257 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
G3M68_RS03405 (G3M68_03405)	comB6	727273..728328 (-)	1056	WP_163498375.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M68_RS03410 (G3M68_03410)	-	728336..729340 (-)	1005	WP_163498376.1	PDZ domain-containing protein	-
G3M68_RS03415 (G3M68_03415)	-	729340..729642 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
G3M68_RS03420 (G3M68_03420)	panD	729645..729998 (-)	354	WP_000142247.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37814.54 Da
• Isoelectric Point: 9.6402

>NTDB_id=421686 G3M68_RS03390 WP_163497925.1 725421..726404(-) (comB9) [Helicobacter pylori strain GCT 43]
MRKVLYAIMGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENKENKENTLENAPTNNKPLKEEKEETKEKEEEAIIIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLW
ACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRF
VKRSKGE

Nucleotide

• Length: 984 bp

>NTDB_id=421686 G3M68_RS03390 WP_163497925.1 725421..726404(-) (comB9) [Helicobacter pylori strain GCT 43]
ATGCGTAAGGTTTTATATGCCATCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATAGATAGTGAAGGCAAGA
TCTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAA
CAACAAACCCTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGGCGATAATTATTGGCGATAACACTAATG
CGATGAAAATCGTTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTATGG
GCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTT
GTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.512	100	0.948