Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   G3M68_RS03395 Genome accession   NZ_CP048600
Coordinates   726404..727147 (-) Length   247 a.a.
NCBI ID   WP_163497926.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721404..732147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS03375 (G3M68_03375) gmd 721624..722769 (-) 1146 WP_163497924.1 GDP-mannose 4,6-dehydratase -
  G3M68_RS03380 (G3M68_03380) - 722810..724222 (-) 1413 WP_097702464.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  G3M68_RS03385 (G3M68_03385) comB10 724292..725428 (-) 1137 WP_097702463.1 DNA type IV secretion system protein ComB10 Machinery gene
  G3M68_RS03390 (G3M68_03390) comB9 725421..726404 (-) 984 WP_163497925.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  G3M68_RS03395 (G3M68_03395) comB8 726404..727147 (-) 744 WP_163497926.1 virB8 family protein Machinery gene
  G3M68_RS03400 (G3M68_03400) comB7 727144..727257 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  G3M68_RS03405 (G3M68_03405) comB6 727273..728328 (-) 1056 WP_163498375.1 P-type conjugative transfer protein TrbL Machinery gene
  G3M68_RS03410 (G3M68_03410) - 728336..729340 (-) 1005 WP_163498376.1 PDZ domain-containing protein -
  G3M68_RS03415 (G3M68_03415) - 729340..729642 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  G3M68_RS03420 (G3M68_03420) panD 729645..729998 (-) 354 WP_000142247.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28665.89 Da        Isoelectric Point: 8.9891

>NTDB_id=421687 G3M68_RS03395 WP_163497926.1 726404..727147(-) (comB8) [Helicobacter pylori strain GCT 43]
MREKPFNSEQLVFLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISLLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
VPTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=421687 G3M68_RS03395 WP_163497926.1 726404..727147(-) (comB8) [Helicobacter pylori strain GCT 43]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAATTAGTCTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTAAGTGATTTGGACATGCAAAGCGTGTTTCGGCTGGAAAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTCTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAGCCCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTAACGAACGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GTGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment