Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | G3M68_RS03385 | Genome accession | NZ_CP048600 |
| Coordinates | 724292..725428 (-) | Length | 378 a.a. |
| NCBI ID | WP_097702463.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 43 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 719292..730428
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M68_RS03365 (G3M68_03365) | hypE | 719390..720388 (+) | 999 | WP_163497922.1 | hydrogenase expression/formation protein HypE | - |
| G3M68_RS03370 (G3M68_03370) | - | 720699..721631 (-) | 933 | WP_163497923.1 | GDP-L-fucose synthase | - |
| G3M68_RS03375 (G3M68_03375) | gmd | 721624..722769 (-) | 1146 | WP_163497924.1 | GDP-mannose 4,6-dehydratase | - |
| G3M68_RS03380 (G3M68_03380) | - | 722810..724222 (-) | 1413 | WP_097702464.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| G3M68_RS03385 (G3M68_03385) | comB10 | 724292..725428 (-) | 1137 | WP_097702463.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| G3M68_RS03390 (G3M68_03390) | comB9 | 725421..726404 (-) | 984 | WP_163497925.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| G3M68_RS03395 (G3M68_03395) | comB8 | 726404..727147 (-) | 744 | WP_163497926.1 | virB8 family protein | Machinery gene |
| G3M68_RS03400 (G3M68_03400) | comB7 | 727144..727257 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| G3M68_RS03405 (G3M68_03405) | comB6 | 727273..728328 (-) | 1056 | WP_163498375.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| G3M68_RS03410 (G3M68_03410) | - | 728336..729340 (-) | 1005 | WP_163498376.1 | PDZ domain-containing protein | - |
| G3M68_RS03415 (G3M68_03415) | - | 729340..729642 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| G3M68_RS03420 (G3M68_03420) | panD | 729645..729998 (-) | 354 | WP_000142247.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42164.66 Da Isoelectric Point: 9.9312
>NTDB_id=421685 G3M68_RS03385 WP_097702463.1 724292..725428(-) (comB10) [Helicobacter pylori strain GCT 43]
MNKWLKGAVVFVGGFATIITFSLIYHQKPKAPSNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKKMNHSKEETFTSPPMDPKANTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAVVFVGGFATIITFSLIYHQKPKAPSNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKKMNHSKEETFTSPPMDPKANTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=421685 G3M68_RS03385 WP_097702463.1 724292..725428(-) (comB10) [Helicobacter pylori strain GCT 43]
GTGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCTCCCTCAAATAACCAACCCAATCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAAAAATGAACCATTCCAAAGAGGAAACTTTTACTAGCCCTCCCATGGATCCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACACC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGGATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCTAATACTGATATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
GTGAATAAGTGGCTTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCTCCCTCAAATAACCAACCCAATCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAAAAATGAACCATTCCAAAGAGGAAACTTTTACTAGCCCTCCCATGGATCCAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACACC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGGATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGTAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAAAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCTAATACTGATATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.974 |
100 |
0.95 |