Detailed information NTG0421689

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: G3M68_RS03405
• Genome accession: NZ_CP048600
• Coordinates: 727273..728328 (-)
• Length: 351 a.a.
• NCBI ID: WP_163498375.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 43
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 722273..733328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M68_RS03380 (G3M68_03380)	-	722810..724222 (-)	1413	WP_097702464.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M68_RS03385 (G3M68_03385)	comB10	724292..725428 (-)	1137	WP_097702463.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M68_RS03390 (G3M68_03390)	comB9	725421..726404 (-)	984	WP_163497925.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M68_RS03395 (G3M68_03395)	comB8	726404..727147 (-)	744	WP_163497926.1	virB8 family protein	Machinery gene
G3M68_RS03400 (G3M68_03400)	comB7	727144..727257 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
G3M68_RS03405 (G3M68_03405)	comB6	727273..728328 (-)	1056	WP_163498375.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M68_RS03410 (G3M68_03410)	-	728336..729340 (-)	1005	WP_163498376.1	PDZ domain-containing protein	-
G3M68_RS03415 (G3M68_03415)	-	729340..729642 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
G3M68_RS03420 (G3M68_03420)	panD	729645..729998 (-)	354	WP_000142247.1	aspartate 1-decarboxylase	-
G3M68_RS03425 (G3M68_03425)	-	729988..732216 (-)	2229	WP_163497927.1	ATP-dependent Clp protease ATP-binding subunit	-
G3M68_RS03430 (G3M68_03430)	-	732216..732491 (-)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
G3M68_RS03435 (G3M68_03435)	-	732493..732906 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39656.55 Da
• Isoelectric Point: 9.0413

>NTDB_id=421689 G3M68_RS03405 WP_163498375.1 727273..728328(-) (comB6) [Helicobacter pylori strain GCT 43]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALSSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=421689 G3M68_RS03405 WP_163498375.1 727273..728328(-) (comB6) [Helicobacter pylori strain GCT 43]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTCATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTCTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGTCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAGTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.017	100	0.94