Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GZS14_RS08105 Genome accession   NZ_CP048326
Coordinates   1701358..1701987 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 61     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696358..1706987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS14_RS08085 (GZS14_08090) ycbZ 1696748..1698508 (-) 1761 WP_000156526.1 Lon protease family protein -
  GZS14_RS08090 (GZS14_08095) matP 1698694..1699146 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  GZS14_RS08095 (GZS14_08100) ompA 1699221..1700273 (-) 1053 WP_000750419.1 porin OmpA -
  GZS14_RS08100 (GZS14_08105) sulA 1700630..1701139 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GZS14_RS08105 (GZS14_08110) sxy/tfoX 1701358..1701987 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GZS14_RS08110 (GZS14_08115) yccS 1701950..1704112 (-) 2163 WP_000875015.1 YccS family putative transporter -
  GZS14_RS08115 (GZS14_08120) yccF 1704122..1704568 (-) 447 WP_001261235.1 YccF domain-containing protein -
  GZS14_RS08120 (GZS14_08125) helD 1704691..1706745 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=420686 GZS14_RS08105 WP_000839153.1 1701358..1701987(+) (sxy/tfoX) [Escherichia coli strain 61]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=420686 GZS14_RS08105 WP_000839153.1 1701358..1701987(+) (sxy/tfoX) [Escherichia coli strain 61]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment