Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   IB935_RS06880 Genome accession   NZ_CP061134
Coordinates   1354899..1355564 (-) Length   221 a.a.
NCBI ID   WP_011528850.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain BSAC_bs192 isolate Invasive disease     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349899..1360564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB935_RS06875 (IB935_06875) hpf 1354271..1354819 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IB935_RS06880 (IB935_06880) comFC/cflB 1354899..1355564 (-) 666 WP_011528850.1 ComF family protein Machinery gene
  IB935_RS06885 (IB935_06885) comFA/cflA 1355536..1356861 (-) 1326 WP_011528851.1 DEAD/DEAH box helicase Machinery gene
  IB935_RS06890 (IB935_06890) - 1356917..1357549 (+) 633 WP_042769749.1 YigZ family protein -
  IB935_RS06895 (IB935_06895) cysK 1357677..1358618 (+) 942 WP_011528853.1 cysteine synthase A -
  IB935_RS06900 (IB935_06900) - 1358636..1359013 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  IB935_RS06905 (IB935_06905) - 1359013..1360413 (-) 1401 WP_021299066.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25190.44 Da        Isoelectric Point: 9.4626

>NTDB_id=420554 IB935_RS06880 WP_011528850.1 1354899..1355564(-) (comFC/cflB) [Streptococcus pyogenes strain BSAC_bs192 isolate Invasive disease]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVNPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=420554 IB935_RS06880 WP_011528850.1 1354899..1355564(-) (comFC/cflB) [Streptococcus pyogenes strain BSAC_bs192 isolate Invasive disease]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAATCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407

Multiple sequence alignment