Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPPN_RS11155 Genome accession   NC_015875
Coordinates   2157860..2158522 (-) Length   220 a.a.
NCBI ID   WP_000649947.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2152860..2163522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS11130 (SPPN_11220) - 2153010..2153276 (-) 267 WP_001278160.1 Veg family protein -
  SPPN_RS11135 (SPPN_11225) dnaB 2153278..2154630 (-) 1353 WP_000852490.1 replicative DNA helicase -
  SPPN_RS11140 (SPPN_11230) rplI 2154674..2155126 (-) 453 WP_000864214.1 50S ribosomal protein L9 -
  SPPN_RS11145 (SPPN_11235) - 2155123..2157096 (-) 1974 WP_000715117.1 DHH family phosphoesterase -
  SPPN_RS11150 (SPPN_11240) hpf 2157232..2157780 (-) 549 WP_000599099.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPPN_RS11155 (SPPN_11245) comFC/cflB 2157860..2158522 (-) 663 WP_000649947.1 ComF family protein Machinery gene
  SPPN_RS11160 (SPPN_11250) comFA/cflA 2158519..2159817 (-) 1299 WP_000867589.1 DEAD/DEAH box helicase Machinery gene
  SPPN_RS11165 (SPPN_11255) - 2159873..2160508 (+) 636 WP_000395743.1 YigZ family protein -
  SPPN_RS14110 - 2160613..2160696 (+) 84 Protein_2224 PH domain-containing protein -
  SPPN_RS11170 (SPPN_11260) cysK 2160793..2161719 (+) 927 WP_000029891.1 cysteine synthase A -
  SPPN_RS11175 (SPPN_11265) tsf 2161841..2162881 (-) 1041 WP_000808091.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25130.17 Da        Isoelectric Point: 8.1528

>NTDB_id=42044 SPPN_RS11155 WP_000649947.1 2157860..2158522(-) (comFC/cflB) [Streptococcus pseudopneumoniae IS7493]
MKCLLCEQTMKTVLTFSSLLLLKNDASCLCLDCDSTFERIGEEHCPNCMKIGLSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLSEELKKYKEYQFVVIPLSPDRYVNRGFNQVEGLVEAAGFSYLDLLGKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=42044 SPPN_RS11155 WP_000649947.1 2157860..2158522(-) (comFC/cflB) [Streptococcus pseudopneumoniae IS7493]
ATGAAGTGCTTGTTATGTGAGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAAGAATGATGCCTC
CTGTCTTTGTTTAGATTGTGATTCTACTTTTGAGAGGATTGGAGAAGAGCACTGTCCAAACTGTATGAAAATAGGATTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTGTTTGCTTCAGTTTTAAGTGA
GGAGTTAAAAAAGTACAAAGAGTATCAATTTGTAGTCATTCCCCTAAGTCCTGATAGATATGTTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGTTTTTCGTATCTGGATTTACTAGGGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAACGCTTGGGGACAGAACTTCCTTTCTTTATAAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTCAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(175-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

94.545

100

0.945
  comFC/cflB Streptococcus pneumoniae Rx1

94.091

100

0.941
  comFC/cflB Streptococcus pneumoniae D39

94.091

100

0.941
  comFC/cflB Streptococcus pneumoniae R6

94.091

100

0.941
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909
  comFC Bacillus subtilis subsp. subtilis str. 168

35.526

100

0.368

Multiple sequence alignment