Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IBL27_RS00220 Genome accession   NZ_CP061071
Coordinates   30977..31543 (+) Length   188 a.a.
NCBI ID   WP_002289046.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 25977..36543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS00195 (IBL27_00195) - 26316..27284 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  IBL27_RS00200 (IBL27_00200) - 27373..28548 (+) 1176 WP_002309165.1 pyridoxal phosphate-dependent aminotransferase -
  IBL27_RS00205 (IBL27_00205) recO 28538..29293 (+) 756 WP_002269787.1 DNA repair protein RecO Machinery gene
  IBL27_RS00210 (IBL27_00210) plsX 29501..30499 (+) 999 WP_002269788.1 phosphate acyltransferase PlsX -
  IBL27_RS00215 (IBL27_00215) - 30501..30749 (+) 249 WP_002263135.1 acyl carrier protein -
  IBL27_RS00220 (IBL27_00220) comA 30977..31543 (+) 567 WP_002289046.1 ATP-binding cassette domain-containing protein Regulator
  IBL27_RS00225 (IBL27_00225) purC 31679..32386 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  IBL27_RS00230 (IBL27_00230) - 32396..36121 (+) 3726 WP_002309164.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20785.57 Da        Isoelectric Point: 4.7600

>NTDB_id=419736 IBL27_RS00220 WP_002289046.1 30977..31543(+) (comA) [Streptococcus mutans B04Sm5]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLDRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=419736 IBL27_RS00220 WP_002289046.1 30977..31543(+) (comA) [Streptococcus mutans B04Sm5]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGTTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGCGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGTGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGGATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGATAGAATAAATCATCGTCCTTTCTC
ATTTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.872

99.468

0.516
  comA Streptococcus gordonii str. Challis substr. CH1

52.198

96.809

0.505
  comA/nlmT Streptococcus mutans UA159

49.468

100

0.495
  comA Streptococcus pneumoniae Rx1

50.273

97.34

0.489
  comA Streptococcus pneumoniae D39

50.273

97.34

0.489
  comA Streptococcus pneumoniae R6

50.273

97.34

0.489
  comA Streptococcus mitis SK321

49.18

97.34

0.479
  comA Streptococcus pneumoniae TIGR4

49.18

97.34

0.479