Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IBL27_RS00205 Genome accession   NZ_CP061071
Coordinates   28538..29293 (+) Length   251 a.a.
NCBI ID   WP_002269787.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23538..34293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS00185 (IBL27_00185) mreD 24280..24786 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  IBL27_RS00190 (IBL27_00190) gbpB 24896..26191 (+) 1296 WP_002289034.1 glucan-binding protein GbpB -
  IBL27_RS00195 (IBL27_00195) - 26316..27284 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  IBL27_RS00200 (IBL27_00200) - 27373..28548 (+) 1176 WP_002309165.1 pyridoxal phosphate-dependent aminotransferase -
  IBL27_RS00205 (IBL27_00205) recO 28538..29293 (+) 756 WP_002269787.1 DNA repair protein RecO Machinery gene
  IBL27_RS00210 (IBL27_00210) plsX 29501..30499 (+) 999 WP_002269788.1 phosphate acyltransferase PlsX -
  IBL27_RS00215 (IBL27_00215) - 30501..30749 (+) 249 WP_002263135.1 acyl carrier protein -
  IBL27_RS00220 (IBL27_00220) comA 30977..31543 (+) 567 WP_002289046.1 ATP-binding cassette domain-containing protein Regulator
  IBL27_RS00225 (IBL27_00225) purC 31679..32386 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29384.89 Da        Isoelectric Point: 6.6577

>NTDB_id=419735 IBL27_RS00205 WP_002269787.1 28538..29293(+) (recO) [Streptococcus mutans B04Sm5]
MQTKETRGLVLYNRQFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=419735 IBL27_RS00205 WP_002269787.1 28538..29293(+) (recO) [Streptococcus mutans B04Sm5]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCAATTTAGAGAAGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATTTTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653