Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GT972_RS04590 Genome accession   NZ_CP048030
Coordinates   905360..905713 (+) Length   117 a.a.
NCBI ID   WP_301331527.1    Uniprot ID   -
Organism   Sinimarinibacterium sp. NLF-5-8     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 900360..910713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT972_RS04565 (GT972_04570) - 900718..901278 (-) 561 WP_162077544.1 Gx transporter family protein -
  GT972_RS04570 (GT972_04575) - 901278..901664 (-) 387 WP_162077545.1 NusG domain II-containing protein -
  GT972_RS04575 (GT972_04580) - 901661..902785 (-) 1125 WP_162077546.1 FAD:protein FMN transferase -
  GT972_RS04580 (GT972_04585) gshB 902802..903767 (-) 966 WP_238388336.1 glutathione synthase -
  GT972_RS04585 (GT972_04590) gshA 903764..905080 (-) 1317 WP_162079440.1 glutamate--cysteine ligase -
  GT972_RS04590 (GT972_04595) pilG 905360..905713 (+) 354 WP_301331527.1 PleD family two-component system response regulator Regulator
  GT972_RS04595 (GT972_04600) - 905728..906276 (+) 549 WP_162077548.1 chemotaxis protein CheW -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13045.07 Da        Isoelectric Point: 7.9971

>NTDB_id=419596 GT972_RS04590 WP_301331527.1 905360..905713(+) (pilG) [Sinimarinibacterium sp. NLF-5-8]
MVIDDSQTIRRTAETLLAREGYQVVTAQDGFEALAKIAEQSPDLIFIDIMMPRLDGYQACALIKGNPRFAKTPVIMLSSK
DGLFDRARGRIVGSDEYLTKPFTKDELLGAVRAHTRK

Nucleotide


Download         Length: 354 bp        

>NTDB_id=419596 GT972_RS04590 WP_301331527.1 905360..905713(+) (pilG) [Sinimarinibacterium sp. NLF-5-8]
ATGGTCATTGACGACAGTCAGACCATTCGCCGTACCGCCGAGACATTGCTGGCGCGCGAAGGCTATCAGGTCGTCACGGC
ACAGGATGGCTTTGAAGCACTGGCCAAGATCGCCGAGCAATCCCCTGATCTGATTTTCATCGACATCATGATGCCGCGGC
TGGATGGCTATCAGGCCTGCGCGCTGATCAAGGGCAATCCACGCTTTGCCAAAACGCCGGTGATCATGCTGTCGTCCAAG
GATGGTTTGTTTGATCGCGCGCGCGGCCGCATCGTCGGCTCCGATGAGTATCTGACCAAGCCGTTCACCAAAGATGAGCT
GCTTGGCGCCGTTCGCGCGCACACACGCAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.783

98.291

0.735
  vicR Streptococcus mutans UA159

44.444

100

0.444
  pilH Synechocystis sp. PCC 6803

42.735

100

0.427
  chiS Vibrio cholerae strain A1552

41.228

97.436

0.402
  chpA Acinetobacter baumannii strain A118

39.823

96.581

0.385
  micA Streptococcus pneumoniae Cp1015

37.607

100

0.376

Multiple sequence alignment