Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GWK91_RS07005 Genome accession   NZ_CP048021
Coordinates   1357899..1359620 (-) Length   573 a.a.
NCBI ID   WP_044158011.1    Uniprot ID   A0A6B9YDV8
Organism   Virgibacillus sp. MSP4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1352899..1364620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK91_RS06985 (GWK91_06980) - 1353911..1354249 (-) 339 WP_044158006.1 SCP2 sterol-binding domain-containing protein -
  GWK91_RS06990 (GWK91_06985) - 1354434..1355162 (-) 729 WP_044158008.1 MBL fold metallo-hydrolase -
  GWK91_RS06995 (GWK91_06990) spo0A 1355325..1356116 (-) 792 WP_044158010.1 sporulation transcription factor Spo0A -
  GWK91_RS07000 (GWK91_06995) spoIVB 1356358..1357638 (-) 1281 WP_370521825.1 SpoIVB peptidase -
  GWK91_RS07005 (GWK91_07000) recN 1357899..1359620 (-) 1722 WP_044158011.1 DNA repair protein RecN Machinery gene
  GWK91_RS07010 (GWK91_07005) ahrC 1359651..1360100 (-) 450 WP_044158014.1 transcriptional regulator AhrC/ArgR -
  GWK91_RS07015 (GWK91_07010) - 1360273..1361085 (-) 813 WP_044158016.1 TlyA family RNA methyltransferase -
  GWK91_RS07020 (GWK91_07015) dxs 1361082..1362983 (-) 1902 WP_044158018.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GWK91_RS07025 (GWK91_07020) - 1363000..1363602 (-) 603 WP_044158019.1 hypothetical protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65578.18 Da        Isoelectric Point: 4.7512

>NTDB_id=419495 GWK91_RS07005 WP_044158011.1 1357899..1359620(-) (recN) [Virgibacillus sp. MSP4-1]
MLAELSIKDFAIIDEIKIDFRDGLTVLTGETGAGKSIIIDAIQLLAGGRGSVEFVRHGSKKAEIEGLFFLDSEEHSAYRK
AEEFGVEMDEEGMLVLNRTITASGKSICRVNGKLVTLAILREFGQTLIDIHSQHETQSLMDTEKHLALLDLYGQKEIMHA
KQEYKEIYEEYKKLKRRYRELSENEQEIAQRLDLLKFQQQELEEAELTLDEDVQLEQERNTLQNYERIYQNISDAYHALY
GEQKALDWLALTMSSLENIKEFDEDLGTKASDISNHYYTMEELSFDLRNKLEEMEYNPERLNEIEGRLNEINRLKRKYGQ
SVEEILNYAAKIDEEIEQLENKDVHLSKLEQDLENKGRDVLLAAEQLHELRKKAAEKLKEAILAELKDLYLEKADFDVHF
SVQEGSASDPEWKGRKVKLHENGLDKVQFLISTNVGEPLKEVHKIASGGELSRIMLAIKKNFARHQGVTSVIFDEVDTGV
SGRVAQAIAEKIYSISNSSQVLCISHLPQVASMADIHLLIEKEIRKDRTITKVNELNHKDKINEIGRMISGTELTETTKE
HAEELISLANDLK

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=419495 GWK91_RS07005 WP_044158011.1 1357899..1359620(-) (recN) [Virgibacillus sp. MSP4-1]
GTGTTAGCAGAATTATCGATAAAAGATTTTGCCATTATTGATGAAATTAAAATTGATTTTAGAGATGGATTAACCGTATT
AACTGGGGAAACGGGTGCCGGAAAATCTATTATTATTGATGCCATCCAGCTTCTTGCAGGTGGCAGGGGCTCTGTGGAAT
TTGTCCGCCATGGTTCCAAAAAAGCTGAAATTGAAGGGCTGTTTTTTCTGGATTCAGAGGAACATTCCGCCTACCGGAAA
GCAGAAGAGTTTGGAGTCGAAATGGACGAAGAGGGGATGCTTGTCTTAAATCGTACCATTACAGCTTCCGGTAAAAGCAT
CTGCCGTGTAAATGGAAAACTGGTTACCCTTGCTATTTTGCGTGAGTTTGGACAAACCTTAATTGATATCCATAGCCAGC
ATGAAACTCAATCCTTAATGGATACTGAAAAACATTTGGCATTATTAGATTTATACGGTCAGAAGGAAATTATGCATGCC
AAACAGGAATATAAGGAAATCTATGAAGAGTACAAAAAATTAAAACGCAGATACCGTGAACTAAGTGAAAATGAACAGGA
AATTGCTCAGAGACTGGACTTGCTTAAATTCCAGCAACAGGAGCTGGAAGAGGCAGAATTAACCCTTGATGAAGATGTGC
AGCTCGAACAGGAGCGAAACACCCTGCAAAATTATGAGAGGATTTATCAAAATATATCTGATGCCTATCACGCCCTGTAC
GGGGAACAAAAGGCATTGGATTGGCTGGCTCTTACCATGTCCTCCCTGGAAAATATTAAAGAATTTGATGAGGATCTGGG
AACGAAAGCCAGTGACATTTCTAATCATTATTATACAATGGAAGAGCTTTCCTTTGATTTGCGTAACAAGTTAGAGGAAA
TGGAATACAACCCGGAAAGGCTGAATGAAATCGAAGGACGATTAAATGAAATCAACCGTCTGAAGCGTAAATACGGCCAA
TCTGTAGAAGAAATACTGAATTATGCAGCTAAGATTGATGAGGAAATTGAGCAATTAGAAAACAAGGACGTCCATTTAAG
TAAGTTAGAGCAGGACCTTGAAAATAAGGGACGTGACGTATTACTGGCTGCAGAACAGCTTCATGAACTAAGAAAGAAAG
CAGCAGAAAAATTAAAGGAAGCCATTCTTGCAGAGCTAAAGGACCTGTATTTGGAAAAAGCCGATTTTGATGTGCATTTT
TCAGTACAGGAAGGCTCGGCATCTGATCCGGAATGGAAAGGGCGAAAAGTCAAGCTGCACGAAAATGGACTTGATAAAGT
TCAGTTTTTAATCAGTACAAATGTTGGCGAGCCGCTCAAAGAGGTTCACAAAATTGCTTCCGGTGGAGAGCTTTCCAGAA
TTATGCTTGCAATTAAAAAGAACTTTGCCCGGCATCAGGGTGTGACCAGTGTGATTTTTGATGAAGTAGACACAGGTGTA
AGTGGCAGAGTCGCACAGGCAATTGCAGAAAAGATTTATTCCATATCAAACAGCTCTCAGGTATTATGTATTTCTCATCT
TCCTCAAGTAGCCTCTATGGCAGATATTCATTTATTAATCGAAAAAGAAATAAGGAAGGATCGTACCATTACAAAAGTTA
ATGAGCTTAATCATAAGGATAAAATTAATGAAATCGGCCGCATGATTTCAGGTACTGAGCTGACAGAAACCACAAAAGAG
CACGCCGAAGAACTTATAAGCCTCGCTAATGATTTGAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B9YDV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.478

100

0.557

Multiple sequence alignment