Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CE10_RS02310 Genome accession   NC_017646
Coordinates   479329..479934 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O7:K1 str. CE10     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 474329..484934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CE10_RS02280 (CE10_0438) rsmS 475034..475195 (-) 162 WP_000051149.1 pleiotropic regulatory protein RsmS -
  CE10_RS02285 (CE10_0439) priC 475209..475736 (-) 528 WP_000844850.1 primosomal replication protein N'' -
  CE10_RS02290 (CE10_0440) ybaN 475806..476183 (+) 378 WP_001188903.1 DUF454 family protein -
  CE10_RS02295 (CE10_0441) apt 476336..476887 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CE10_RS02300 (CE10_0442) dnaX 477016..478947 (+) 1932 WP_000122016.1 DNA polymerase III subunit gamma/tau -
  CE10_RS02305 (CE10_0443) ybaB 479000..479329 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CE10_RS02310 (CE10_0444) recR 479329..479934 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CE10_RS02315 (CE10_0445) htpG 480044..481918 (+) 1875 WP_000678196.1 molecular chaperone HtpG -
  CE10_RS02320 (CE10_0446) adk 482137..482781 (+) 645 WP_001313630.1 adenylate kinase -
  CE10_RS02325 (CE10_0447) hemH 482913..483875 (+) 963 WP_001250105.1 ferrochelatase -
  CE10_RS02330 (CE10_0448) aes 483872..484831 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=41856 CE10_RS02310 WP_001195025.1 479329..479934(+) (recR) [Escherichia coli O7:K1 str. CE10]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=41856 CE10_RS02310 WP_001195025.1 479329..479934(+) (recR) [Escherichia coli O7:K1 str. CE10]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment