Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   SALIVB_RS10335 Genome accession   NC_015760
Coordinates   2216283..2217050 (+) Length   255 a.a.
NCBI ID   WP_013991348.1    Uniprot ID   A0AB33ZDS6
Organism   Streptococcus salivarius CCHSS3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2211283..2222050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS10300 (SALIVB_2149) tnpA 2212431..2212895 (-) 465 WP_002883780.1 IS200/IS605 family transposase -
  SALIVB_RS10320 (SALIVB_2153) - 2213598..2214281 (-) 684 WP_013991345.1 YoaK family protein -
  SALIVB_RS10325 (SALIVB_2154) rlmH 2214297..2214776 (-) 480 WP_014632473.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SALIVB_RS10330 (SALIVB_2155) htrA 2214982..2216217 (+) 1236 WP_013991347.1 S1C family serine protease Regulator
  SALIVB_RS10335 (SALIVB_2156) spo0J 2216283..2217050 (+) 768 WP_013991348.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 255 a.a.        Molecular weight: 29363.86 Da        Isoelectric Point: 9.5843

>NTDB_id=41857 SALIVB_RS10335 WP_013991348.1 2216283..2217050(+) (spo0J) [Streptococcus salivarius CCHSS3]
MQEQLKALPISDIYPNPFQPRIEFSDEELAELSQSIAENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRSLINELAYSHEELAKAMGKSRPYISNALRLLQLPKEIQTSIENGKLSQG
HARALLAVEDTKKQLTIYHQVLTEKWSVRTLEKRLQELPKKQKSKKDIHIKDKEKELEKSLGLPVTLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=41857 SALIVB_RS10335 WP_013991348.1 2216283..2217050(+) (spo0J) [Streptococcus salivarius CCHSS3]
ATGCAAGAACAACTCAAAGCTTTACCTATTAGTGACATCTATCCCAATCCTTTTCAACCTCGTATAGAGTTCTCTGATGA
AGAATTAGCGGAGCTAAGCCAATCGATTGCAGAAAATGGACTAATACAGCCAATCATTGTCCGAAAATCGGATATTATTG
GTTATGAACTAATTGCTGGGGAAAGACGTTTACGTGCCTGTAAACGTCTAGGAATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATTTACAACGATCGAATCTCAATCCCATTGAAGAAGC
AAAGGCCTATCGTAGTTTAATTAATGAGCTAGCTTATAGTCACGAGGAACTGGCGAAAGCTATGGGGAAATCCAGACCCT
ATATCAGTAACGCTCTTAGACTCCTCCAACTTCCCAAAGAGATACAGACAAGTATCGAAAATGGCAAACTGAGTCAAGGA
CATGCTAGAGCACTTTTAGCTGTTGAGGATACAAAAAAGCAACTAACTATCTATCATCAGGTCCTTACTGAAAAATGGTC
TGTTCGTACCCTGGAAAAAAGACTTCAAGAACTTCCAAAAAAACAAAAATCAAAAAAAGATATTCATATAAAAGATAAAG
AAAAAGAACTTGAAAAATCACTTGGTCTCCCCGTTACTCTTCGTTATCACAAAAATCACTCTGGAACTATTCAGATCCAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

100

0.576


Multiple sequence alignment