Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3T09_RS13460 Genome accession   NZ_CP047813
Coordinates   2726429..2726899 (+) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain UP_1500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2702711..2733042 2726429..2726899 within 0


Gene organization within MGE regions


Location: 2702711..2733042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T09_RS13310 (E3T09_13310) groES 2702711..2702995 (+) 285 WP_000917289.1 co-chaperone GroES -
  E3T09_RS13315 (E3T09_13315) groL 2703071..2704687 (+) 1617 WP_086037082.1 chaperonin GroEL -
  E3T09_RS13320 (E3T09_13320) - 2705221..2706528 (-) 1308 WP_043044126.1 TrkH family potassium uptake protein -
  E3T09_RS13325 (E3T09_13325) hemA 2707044..2708245 (+) 1202 Protein_2580 5-aminolevulinate synthase -
  E3T09_RS13695 - 2708248..2708679 (+) 432 WP_224103798.1 DMT family transporter -
  E3T09_RS13700 - 2708686..2709117 (+) 432 WP_224103802.1 DMT family transporter -
  E3T09_RS13335 (E3T09_13335) - 2709615..2710838 (-) 1224 WP_043044128.1 ArgE/DapE family deacylase -
  E3T09_RS13340 (E3T09_13340) lukH 2711274..2712326 (+) 1053 WP_000791404.1 bi-component leukocidin LukGH subunit H -
  E3T09_RS13345 (E3T09_13345) lukG 2712348..2713364 (+) 1017 WP_000595401.1 bi-component leukocidin LukGH subunit G -
  E3T09_RS13350 (E3T09_13350) sph 2713602..2714426 (-) 825 Protein_2586 sphingomyelin phosphodiesterase -
  E3T09_RS13355 (E3T09_13355) - 2714483..2715520 (-) 1038 WP_000857176.1 tyrosine-type recombinase/integrase -
  E3T09_RS13360 (E3T09_13360) - 2715628..2716242 (+) 615 WP_000191459.1 hypothetical protein -
  E3T09_RS13365 (E3T09_13365) - 2716239..2716385 (-) 147 WP_001013104.1 hypothetical protein -
  E3T09_RS13370 (E3T09_13370) - 2716421..2716603 (-) 183 WP_000705243.1 hypothetical protein -
  E3T09_RS13375 (E3T09_13375) - 2716648..2717505 (-) 858 WP_000804508.1 HIRAN domain-containing protein -
  E3T09_RS13380 (E3T09_13380) - 2717517..2718233 (-) 717 WP_160186753.1 LexA family transcriptional regulator -
  E3T09_RS13385 (E3T09_13385) - 2718397..2718639 (+) 243 WP_000639922.1 DUF739 family protein -
  E3T09_RS13390 (E3T09_13390) - 2718655..2719443 (+) 789 WP_001148565.1 phage antirepressor -
  E3T09_RS13395 (E3T09_13395) - 2719459..2719653 (+) 195 WP_001148859.1 hypothetical protein -
  E3T09_RS13400 (E3T09_13400) - 2719648..2720004 (-) 357 WP_000768245.1 DUF2513 domain-containing protein -
  E3T09_RS13405 (E3T09_13405) - 2720054..2720806 (+) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  E3T09_RS13410 (E3T09_13410) - 2720822..2721019 (+) 198 WP_001148862.1 hypothetical protein -
  E3T09_RS13415 (E3T09_13415) - 2721006..2721386 (-) 381 WP_000762521.1 DUF2513 domain-containing protein -
  E3T09_RS13420 (E3T09_13420) - 2721441..2721764 (+) 324 WP_001120201.1 DUF771 domain-containing protein -
  E3T09_RS13425 (E3T09_13425) - 2721761..2721922 (+) 162 WP_000048129.1 DUF1270 family protein -
  E3T09_RS13430 (E3T09_13430) - 2722017..2722319 (+) 303 WP_000165371.1 DUF2482 family protein -
  E3T09_RS13435 (E3T09_13435) - 2722324..2722584 (+) 261 WP_000291510.1 DUF1108 family protein -
  E3T09_RS13440 (E3T09_13440) - 2722593..2722856 (+) 264 WP_001205732.1 hypothetical protein -
  E3T09_RS13445 (E3T09_13445) - 2722865..2724808 (+) 1944 WP_000700555.1 AAA family ATPase -
  E3T09_RS13450 (E3T09_13450) - 2724810..2725730 (+) 921 WP_000138475.1 recombinase RecT -
  E3T09_RS13455 (E3T09_13455) - 2725811..2726428 (+) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  E3T09_RS13460 (E3T09_13460) ssbA 2726429..2726899 (+) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  E3T09_RS13465 (E3T09_13465) - 2726929..2727822 (+) 894 WP_043044133.1 DnaD domain protein -
  E3T09_RS13470 (E3T09_13470) - 2727829..2728047 (+) 219 WP_000338528.1 hypothetical protein -
  E3T09_RS13475 (E3T09_13475) - 2728056..2728460 (+) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  E3T09_RS13480 (E3T09_13480) - 2728473..2728841 (+) 369 WP_000101273.1 SA1788 family PVL leukocidin-associated protein -
  E3T09_RS13485 (E3T09_13485) - 2728845..2729087 (+) 243 WP_000131370.1 SAV1978 family virulence-associated passenger protein -
  E3T09_RS13490 (E3T09_13490) - 2729102..2729356 (+) 255 WP_001065097.1 DUF1024 family protein -
  E3T09_RS13600 - 2729343..2729513 (+) 171 WP_000714403.1 hypothetical protein -
  E3T09_RS13495 (E3T09_13495) - 2729506..2730042 (+) 537 WP_001066447.1 dUTP diphosphatase -
  E3T09_RS13500 (E3T09_13500) - 2730079..2730324 (+) 246 WP_001282074.1 hypothetical protein -
  E3T09_RS13505 (E3T09_13505) - 2730321..2730509 (+) 189 WP_000195782.1 DUF1381 domain-containing protein -
  E3T09_RS13510 (E3T09_13510) - 2730484..2730684 (+) 201 WP_001125015.1 hypothetical protein -
  E3T09_RS13515 (E3T09_13515) rinB 2730687..2730836 (+) 150 WP_001813911.1 transcriptional activator RinB -
  E3T09_RS13520 (E3T09_13520) - 2730836..2731036 (+) 201 WP_001813913.1 DUF1514 family protein -
  E3T09_RS13525 (E3T09_13525) - 2731059..2731520 (+) 462 WP_000282752.1 hypothetical protein -
  E3T09_RS13530 (E3T09_13530) - 2731634..2732086 (+) 453 WP_000406193.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  E3T09_RS13535 (E3T09_13535) - 2732102..2732446 (+) 345 WP_016169209.1 HNH endonuclease -
  E3T09_RS13540 (E3T09_13540) - 2732575..2733042 (+) 468 WP_000919027.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=417119 E3T09_RS13460 WP_000934760.1 2726429..2726899(+) (ssbA) [Staphylococcus aureus strain UP_1500]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=417119 E3T09_RS13460 WP_000934760.1 2726429..2726899(+) (ssbA) [Staphylococcus aureus strain UP_1500]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment