NTDB

Overview

Name	comFC/cflB	Type	Machinery gene
Locus tag	HUG14_RS08960	Genome accession	NZ_CP060580
Coordinates	1821498..1822148 (-)	Length	216 a.a.
NCBI ID	WP_039115352.1	Uniprot ID	-
Organism	Lactococcus lactis strain K_LL005
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1816498..1827148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUG14_RS08930 (HUG14_08930)	-	1816654..1818186 (+)	1533	WP_187398314.1	Nramp family divalent metal transporter	-
HUG14_RS08935 (HUG14_08935)	-	1818288..1819256 (+)	969	WP_003130649.1	PhoH family protein	-
HUG14_RS08940 (HUG14_08940)	-	1819314..1819793 (+)	480	WP_021722517.1	NUDIX hydrolase	-
HUG14_RS08945 (HUG14_08945)	ybeY	1819945..1820433 (+)	489	WP_021722516.1	rRNA maturation RNase YbeY	-
HUG14_RS08950 (HUG14_08950)	-	1820417..1820872 (+)	456	WP_003130653.1	diacylglycerol kinase family protein	-
HUG14_RS08955 (HUG14_08955)	-	1820886..1821464 (+)	579	WP_021722515.1	nucleotidyltransferase family protein	-
HUG14_RS08960 (HUG14_08960)	comFC/cflB	1821498..1822148 (-)	651	WP_039115352.1	ComF family protein	Machinery gene
HUG14_RS11835 (HUG14_08965)	-	1822145..1823466 (-)	1322	Protein_1725	DEAD/DEAH box helicase	-
HUG14_RS08970 (HUG14_08970)	-	1823523..1824152 (+)	630	WP_003130660.1	YigZ family protein	-
HUG14_RS08975 (HUG14_08975)	-	1824286..1824783 (+)	498	WP_003130662.1	VanZ family protein	-
HUG14_RS08980 (HUG14_08980)	-	1824831..1825850 (+)	1020	WP_012897709.1	DUF475 domain-containing protein	-
HUG14_RS08985 (HUG14_08985)	-	1825966..1826712 (+)	747	WP_187398315.1	bifunctional metallophosphatase/5'-nucleotidase	-

Sequence

Protein

Download Length: 216 a.a. Molecular weight: 25347.48 Da Isoelectric Point: 9.3752

                                >NTDB_id=415361 HUG14_RS08960 WP_039115352.1 1821498..1822148(-) (comFC/cflB) [Lactococcus lactis strain K_LL005]

MIKCLLCSRSIAQNFLFSELFLLKSPQNLLCSKCQKNFEKIPEAHCPRCCKPNVHEICTDCQNWEKRGYKIRHQAIFHYN

QAMKDYFSQYKFVGDYRLYQIFEPYFKSISPKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRK

ERLESPNPFRLKKGLKVPTKVIIIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide

Download Length: 651 bp

                                >NTDB_id=415361 HUG14_RS08960 WP_039115352.1 1821498..1822148(-) (comFC/cflB) [Lactococcus lactis strain K_LL005]

ATGATAAAGTGTTTGCTTTGTTCAAGAAGTATTGCTCAAAACTTTCTATTTAGTGAACTTTTCCTACTCAAAAGTCCTCA

AAATCTTTTATGTTCTAAATGTCAAAAAAATTTTGAAAAGATCCCTGAAGCTCACTGTCCTCGCTGCTGTAAGCCAAATG

TCCATGAGATCTGTACTGATTGTCAAAATTGGGAAAAAAGAGGATACAAAATCAGACATCAGGCAATTTTTCACTACAAT

CAAGCAATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAA

AAGTATTTCCCCAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGA

CTGCTTTTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAA

GAACGATTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATAATAATTGACGATAT

TTATACAACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTC

TCTGCCGTTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC/cflB	Streptococcus mitis NCTC 12261	45.455	100	0.463
comFC/cflB	Streptococcus mitis SK321	45	100	0.458
comFC/cflB	Streptococcus pneumoniae Rx1	44.091	100	0.449
comFC/cflB	Streptococcus pneumoniae D39	44.091	100	0.449
comFC/cflB	Streptococcus pneumoniae R6	44.091	100	0.449
comFC/cflB	Streptococcus pneumoniae TIGR4	44.091	100	0.449
comFC	Lactococcus lactis subsp. cremoris KW2	66.418	62.037	0.412
comFC	Bacillus subtilis subsp. subtilis str. 168	36.842	100	0.389

Detailed information NTG0415361