Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DNR44_RS03765 Genome accession   NZ_CP047673
Coordinates   713999..714487 (+) Length   162 a.a.
NCBI ID   WP_112222204.1    Uniprot ID   A0A365L7Y6
Organism   Planococcus halotolerans strain Y50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 708999..719487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNR44_RS03730 (DNR44_003715) - 709194..709910 (+) 717 WP_135814789.1 DUF554 domain-containing protein -
  DNR44_RS03735 (DNR44_003720) - 709989..710843 (+) 855 WP_135815493.1 mechanosensitive ion channel family protein -
  DNR44_RS03740 (DNR44_003725) - 710896..711102 (+) 207 WP_084243437.1 DUF951 domain-containing protein -
  DNR44_RS03745 (DNR44_003730) ychF 711190..712290 (+) 1101 WP_112222344.1 redox-regulated ATPase YchF -
  DNR44_RS03750 (DNR44_003735) - 712408..712782 (+) 375 WP_112222209.1 gamma-glutamylcyclotransferase family protein -
  DNR44_RS03755 (DNR44_003740) - 712852..713403 (-) 552 WP_135814790.1 DUF3267 domain-containing protein -
  DNR44_RS03760 (DNR44_003745) rpsF 713661..713948 (+) 288 WP_112222206.1 30S ribosomal protein S6 -
  DNR44_RS03765 (DNR44_003750) ssbA 713999..714487 (+) 489 WP_112222204.1 single-stranded DNA-binding protein Machinery gene
  DNR44_RS03770 (DNR44_003755) rpsR 714539..714775 (+) 237 WP_084243442.1 30S ribosomal protein S18 -
  DNR44_RS03775 (DNR44_003760) - 715119..716078 (+) 960 WP_112222202.1 YybS family protein -
  DNR44_RS03780 (DNR44_003765) - 716092..718068 (+) 1977 WP_112222200.1 DHH family phosphoesterase -
  DNR44_RS03785 (DNR44_003770) rplI 718065..718514 (+) 450 WP_135814791.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17744.36 Da        Isoelectric Point: 5.2517

>NTDB_id=415169 DNR44_RS03765 WP_112222204.1 713999..714487(+) (ssbA) [Planococcus halotolerans strain Y50]
MINRVVLVGRLTKDPDLRYTPSGAAVARFTLAVNRTFSNAQGEKEADFINCTVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTEVVADSVQFLEPRNAGAGSDRSDRSQGQQPSSYQQNQPTSQQNNHTRVDQDPFSSGSGPIEVSDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=415169 DNR44_RS03765 WP_112222204.1 713999..714487(+) (ssbA) [Planococcus halotolerans strain Y50]
ATGATTAACCGAGTTGTATTAGTCGGAAGGCTTACAAAAGATCCAGATCTTCGCTACACACCAAGCGGTGCGGCGGTTGC
ACGTTTTACACTTGCTGTAAACCGTACATTCTCCAATGCGCAAGGTGAAAAGGAAGCGGATTTTATCAACTGTACTGTTT
GGCGCAAACAAGCTGAAAACACAGCGAATTTCCTTAAAAAAGGGAGTTTGGCAGGTGTTGAAGGCCGCATCCAGACAGGC
AGCTACGAGGGACAGGATGGAAAACGTGTATATACGACTGAAGTGGTGGCGGACAGCGTTCAATTCCTTGAACCGCGGAA
TGCCGGAGCCGGTTCAGACCGTTCAGACCGTTCACAAGGGCAACAGCCATCATCCTATCAGCAGAACCAACCGACAAGTC
AGCAAAACAATCATACCCGTGTAGACCAGGATCCATTCTCAAGCGGCAGCGGCCCGATCGAAGTATCGGATGACGATTTG
CCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A365L7Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.925

65.432

0.444
  ssb Neisseria meningitidis MC58

34.483

100

0.37
  ssb Vibrio cholerae strain A1552

33.523

100

0.364
  ssb Neisseria gonorrhoeae MS11

34.104

100

0.364

Multiple sequence alignment