Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   GU337_RS11310 Genome accession   NZ_CP047614
Coordinates   2226993..2228078 (-) Length   361 a.a.
NCBI ID   WP_310592697.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_19_7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2221993..2233078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU337_RS11265 (GU337_11205) - 2222190..2222960 (-) 771 WP_244165990.1 metal ABC transporter ATP-binding protein -
  GU337_RS11270 (GU337_11210) - 2222960..2223409 (-) 450 WP_096039675.1 zinc-dependent MarR family transcriptional regulator -
  GU337_RS11275 (GU337_11215) - 2223485..2224333 (-) 849 WP_167838309.1 aminotransferase class IV -
  GU337_RS11280 (GU337_11220) ispE 2224417..2225268 (-) 852 WP_061774322.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  GU337_RS11285 (GU337_11225) comGG 2225273..2225557 (-) 285 WP_096039677.1 competence type IV pilus minor pilin ComGG -
  GU337_RS11290 (GU337_11230) comGF 2225569..2226012 (-) 444 WP_244165991.1 competence type IV pilus minor pilin ComGF -
  GU337_RS11295 (GU337_11235) comGE 2225987..2226292 (-) 306 WP_082785376.1 competence type IV pilus minor pilin ComGE -
  GU337_RS12445 comGD 2226264..2226749 (-) 486 WP_312186085.1 competence type IV pilus minor pilin ComGD -
  GU337_RS11305 (GU337_11245) comYC 2226664..2226984 (-) 321 WP_061774318.1 competence type IV pilus major pilin ComGC Machinery gene
  GU337_RS11310 (GU337_11250) comYB 2226993..2228078 (-) 1086 WP_310592697.1 competence type IV pilus assembly protein ComGB Machinery gene
  GU337_RS11315 (GU337_11255) comGA/cglA/cilD 2227960..2228901 (-) 942 WP_061774317.1 competence type IV pilus ATPase ComGA Machinery gene
  GU337_RS11320 (GU337_11260) - 2228964..2229251 (-) 288 WP_167840317.1 hypothetical protein -
  GU337_RS11325 (GU337_11265) - 2229337..2230335 (+) 999 WP_024047037.1 IS5-like element IS1194 family transposase -
  GU337_RS11330 (GU337_11270) - 2230459..2232018 (-) 1560 WP_167840318.1 acyltransferase family protein -
  GU337_RS11335 (GU337_11275) - 2232015..2232293 (-) 279 WP_167840413.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41434.26 Da        Isoelectric Point: 10.0964

>NTDB_id=414621 GU337_RS11310 WP_310592697.1 2226993..2228078(-) (comYB) [Lactococcus raffinolactis strain Lr_19_7]
MLKKHSKGMPTTSGMPKLKNWLQKDISHLIRRQPKRLAIKQQVKLMQLMNNLFLSGFHLAEIVNFLSRSKLVEERFVATM
RDGLSNGQNLSQILNDLRFSNLVVTQVALADYHGDTQQTLTLIIDNLTKIQKVRKKLVAVSTYPIILLTFLIIIVLGLKT
YLLPQVETDSFAGTVINALPLIFIGLSLVLTFFALGLIRYFKSTSPLANVQWLGRLPLIRSYLKLYLTAFYAREWGNLVK
QGLEMRQILEMMTSQQNLLFREIGQDIRRAMQVGEEFHDKIKQYSFFTPELALIIEYGEMKGKLGDELLIYSDESWTKFF
EKVESAMNVIQPLVFLFVALMIVLIYAAMLLPIYAQMDLGM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=414621 GU337_RS11310 WP_310592697.1 2226993..2228078(-) (comYB) [Lactococcus raffinolactis strain Lr_19_7]
GTGCTGAAAAAGCATTCGAAAGGCATGCCAACGACAAGTGGCATGCCAAAATTGAAAAATTGGTTACAGAAGGACATCTC
ACACCTGATCAGGCGACAGCCGAAAAGGTTAGCGATTAAGCAACAAGTGAAGCTGATGCAGTTGATGAATAACCTCTTTT
TGAGTGGTTTTCATTTAGCAGAAATTGTTAATTTTTTGAGCCGCTCGAAGCTAGTGGAGGAGAGATTTGTTGCGACTATG
CGAGATGGCTTATCGAATGGTCAAAATCTCTCACAAATCTTAAATGATTTACGTTTTTCAAACTTAGTCGTCACACAAGT
TGCTTTAGCAGATTACCATGGTGATACCCAGCAAACACTGACATTAATAATAGATAATTTAACAAAAATTCAGAAGGTTC
GAAAAAAATTGGTGGCTGTATCGACCTATCCCATCATCTTGTTAACTTTTCTAATCATCATCGTACTGGGATTAAAAACC
TATTTGCTACCCCAAGTTGAAACGGATAGTTTTGCGGGCACTGTGATCAATGCCTTACCTTTGATTTTTATCGGGTTGAG
CCTCGTGTTAACATTTTTTGCGTTAGGACTGATTCGGTATTTCAAATCAACATCACCATTGGCTAATGTCCAATGGTTAG
GTCGTCTTCCCTTGATCCGATCGTACTTAAAGCTTTATCTGACAGCGTTTTATGCGCGAGAGTGGGGAAACTTGGTTAAG
CAAGGTTTGGAGATGCGACAAATATTGGAGATGATGACCAGCCAACAGAATCTACTTTTTCGTGAAATTGGTCAAGATAT
AAGGCGGGCTATGCAAGTGGGGGAAGAATTTCACGACAAGATTAAGCAATACAGCTTTTTCACACCGGAGTTGGCCCTCA
TCATCGAATATGGTGAAATGAAGGGCAAATTAGGTGATGAATTACTCATCTATTCGGATGAATCCTGGACAAAATTTTTT
GAAAAGGTTGAAAGCGCCATGAATGTCATTCAGCCATTGGTTTTTTTGTTTGTCGCTTTGATGATTGTTTTAATCTATGC
AGCTATGTTGCTACCTATTTATGCTCAGATGGATCTGGGCATGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(47-164)

Type II secretion system (T2SS), protein F (T2SSF)

(232-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

50.725

95.568

0.485
  comYB Streptococcus mutans UA159

50.725

95.568

0.485
  comYB Streptococcus gordonii str. Challis substr. CH1

50.588

94.183

0.476
  comGB Lactococcus lactis subsp. cremoris KW2

49.267

94.46

0.465
  comGB/cglB Streptococcus pneumoniae R6

47.164

92.798

0.438
  comGB/cglB Streptococcus pneumoniae TIGR4

47.164

92.798

0.438
  comGB/cglB Streptococcus mitis NCTC 12261

47.164

92.798

0.438
  comGB/cglB Streptococcus pneumoniae Rx1

47.164

92.798

0.438
  comGB/cglB Streptococcus pneumoniae D39

47.164

92.798

0.438
  comGB/cglB Streptococcus mitis SK321

46.567

92.798

0.432

Multiple sequence alignment