Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GTW28_RS12600 Genome accession   NZ_CP047485
Coordinates   2444832..2445128 (-) Length   98 a.a.
NCBI ID   WP_014477332.1    Uniprot ID   -
Organism   Bacillus subtilis strain BJQ0005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2439832..2450128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS12555 (GTW28_12555) tasA 2440239..2441024 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  GTW28_RS12560 (GTW28_12560) sipW 2441088..2441660 (-) 573 WP_003230181.1 signal peptidase I SipW -
  GTW28_RS12565 (GTW28_12565) tapA 2441644..2442405 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  GTW28_RS12570 (GTW28_12570) yqzG 2442677..2443003 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  GTW28_RS12575 (GTW28_12575) spoIITA 2443045..2443224 (-) 180 WP_029726723.1 YqzE family protein -
  GTW28_RS12580 (GTW28_12580) comGG 2443296..2443670 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  GTW28_RS12585 (GTW28_12585) comGF 2443671..2444054 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  GTW28_RS12590 (GTW28_12590) comGE 2444080..2444427 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  GTW28_RS12595 (GTW28_12595) comGD 2444411..2444842 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  GTW28_RS12600 (GTW28_12600) comGC 2444832..2445128 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  GTW28_RS12605 (GTW28_12605) comGB 2445142..2446179 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  GTW28_RS12610 (GTW28_12610) comGA 2446166..2447236 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  GTW28_RS12615 (GTW28_12615) - 2447448..2447645 (-) 198 WP_014480259.1 CBS domain-containing protein -
  GTW28_RS12620 (GTW28_12620) corA 2447647..2448600 (-) 954 WP_004399136.1 magnesium transporter CorA -
  GTW28_RS12625 (GTW28_12625) yqhB 2448743..2450071 (+) 1329 WP_003230150.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10830.69 Da        Isoelectric Point: 6.4730

>NTDB_id=413688 GTW28_RS12600 WP_014477332.1 2444832..2445128(-) (comGC) [Bacillus subtilis strain BJQ0005]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=413688 GTW28_RS12600 WP_014477332.1 2444832..2445128(-) (comGC) [Bacillus subtilis strain BJQ0005]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCCTACAAAACATGGTTAAGGCACAAATGACTG
CCTTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment