Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GT360_RS19775 Genome accession   NZ_CP047476
Coordinates   1212344..1212643 (-) Length   99 a.a.
NCBI ID   WP_164650661.1    Uniprot ID   A0A7Z2YG23
Organism   Vibrio astriarenae strain HN897     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1207344..1217643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT360_RS19750 (GT360_19770) lapB 1207465..1208634 (-) 1170 WP_164650657.1 lipopolysaccharide assembly protein LapB -
  GT360_RS19755 (GT360_19775) - 1208647..1208937 (-) 291 WP_164651172.1 LapA family protein -
  GT360_RS19760 (GT360_19780) ihfB 1209072..1209356 (-) 285 WP_164650658.1 integration host factor subunit beta -
  GT360_RS19765 (GT360_19785) rpsA 1209710..1211380 (-) 1671 WP_164650659.1 30S ribosomal protein S1 -
  GT360_RS19770 (GT360_19790) cmk 1211492..1212169 (-) 678 WP_164650660.1 (d)CMP kinase -
  GT360_RS19775 (GT360_19795) comEA 1212344..1212643 (-) 300 WP_164650661.1 ComEA family DNA-binding protein Machinery gene
  GT360_RS19780 (GT360_19800) ppiD 1212799..1214649 (-) 1851 WP_164650662.1 peptidylprolyl isomerase -
  GT360_RS19785 (GT360_19805) - 1214846..1215148 (-) 303 WP_164651173.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10862.64 Da        Isoelectric Point: 6.3246

>NTDB_id=413633 GT360_RS19775 WP_164650661.1 1212344..1212643(-) (comEA) [Vibrio astriarenae strain HN897]
MKRLLSTIICSLILMLGVSSTAYAKTEAKEYEGIEITVNINTASAEELATLLDGVGLKKAQAIIDYRDEYGVFKSADELT
QVKGIGPSLLKKNQERIRL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=413633 GT360_RS19775 WP_164650661.1 1212344..1212643(-) (comEA) [Vibrio astriarenae strain HN897]
ATGAAACGTCTATTATCAACTATAATTTGTTCACTCATTTTGATGTTAGGAGTGTCGTCTACCGCGTATGCAAAAACGGA
AGCGAAGGAGTACGAAGGGATAGAAATTACCGTCAACATTAATACCGCATCGGCTGAAGAACTCGCTACTTTGCTTGATG
GCGTGGGTTTGAAAAAAGCACAAGCGATTATCGACTATCGTGACGAATATGGAGTCTTTAAATCGGCAGATGAACTCACT
CAAGTTAAAGGAATTGGCCCGTCGCTACTTAAGAAAAATCAAGAGCGTATTCGACTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2YG23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

59.341

91.919

0.545
  comEA Vibrio cholerae C6706

56.25

96.97

0.545
  comEA Vibrio cholerae strain A1552

56.25

96.97

0.545
  comEA Vibrio campbellii strain DS40M4

54.545

100

0.545
  comEA Legionella pneumophila str. Paris

39.604

100

0.404
  comEA Legionella pneumophila strain ERS1305867

39.604

100

0.404
  comEA Acinetobacter baylyi ADP1

45.122

82.828

0.374

Multiple sequence alignment