Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | H5409_RS24955 | Genome accession | NZ_CP060086 |
| Coordinates | 5406366..5406905 (-) | Length | 179 a.a. |
| NCBI ID | WP_003116248.1 | Uniprot ID | Q59651 |
| Organism | Pseudomonas aeruginosa strain JNQH-PA57 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5401366..5411905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5409_RS24935 (H5409_24935) | - | 5401792..5402940 (-) | 1149 | WP_172773772.1 | DUF6531 domain-containing protein | - |
| H5409_RS24940 (H5409_24940) | - | 5405119..5405361 (+) | 243 | WP_023109353.1 | hypothetical protein | - |
| H5409_RS24950 (H5409_24950) | - | 5405604..5406302 (-) | 699 | WP_023120877.1 | hypothetical protein | - |
| H5409_RS24955 (H5409_24955) | pilE | 5406366..5406905 (-) | 540 | WP_003116248.1 | pilin | Machinery gene |
| H5409_RS24960 (H5409_24960) | pilB | 5407134..5408837 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| H5409_RS24965 (H5409_24965) | pilC | 5408841..5410058 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| H5409_RS24970 (H5409_24970) | pilD | 5410061..5410933 (+) | 873 | WP_121382106.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| H5409_RS24975 (H5409_24975) | coaE | 5410930..5411541 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| H5409_RS24980 (H5409_24980) | yacG | 5411538..5411738 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 18003.27 Da Isoelectric Point: 4.6894
>NTDB_id=413333 H5409_RS24955 WP_003116248.1 5406366..5406905(-) (pilE) [Pseudomonas aeruginosa strain JNQH-PA57]
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
Nucleotide
Download Length: 540 bp
>NTDB_id=413333 H5409_RS24955 WP_003116248.1 5406366..5406905(-) (pilE) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.451 |
100 |
0.447 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
44.444 |
100 |
0.447 |
| pilA2 | Legionella pneumophila str. Paris |
42.373 |
98.883 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.808 |
98.883 |
0.413 |
| comP | Acinetobacter baylyi ADP1 |
38.889 |
100 |
0.391 |