Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GTO82_RS06680 Genome accession   NZ_CP047409
Coordinates   1408333..1409415 (-) Length   360 a.a.
NCBI ID   WP_004897730.1    Uniprot ID   A0A7D9N7K0
Organism   Lactobacillus johnsonii strain 3DG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1403333..1414415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTO82_RS06660 (GTO82_06660) - 1403348..1404589 (-) 1242 WP_260983197.1 DEAD/DEAH box helicase family protein -
  GTO82_RS06665 (GTO82_06665) - 1404658..1405323 (+) 666 WP_180872972.1 YigZ family protein -
  GTO82_RS06670 (GTO82_06670) - 1405341..1406483 (-) 1143 WP_180872973.1 MraY family glycosyltransferase -
  GTO82_RS06675 (GTO82_06675) rny 1406584..1408206 (-) 1623 WP_004897729.1 ribonuclease Y -
  GTO82_RS06680 (GTO82_06680) recA 1408333..1409415 (-) 1083 WP_004897730.1 recombinase RecA Machinery gene
  GTO82_RS06685 (GTO82_06685) pgsA 1409578..1410141 (-) 564 WP_011161759.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GTO82_RS06690 (GTO82_06690) - 1410141..1411190 (-) 1050 WP_180872974.1 RodZ domain-containing protein -
  GTO82_RS06695 (GTO82_06695) - 1411249..1411977 (-) 729 WP_011161757.1 SDR family NAD(P)-dependent oxidoreductase -
  GTO82_RS06700 (GTO82_06700) - 1411978..1413213 (-) 1236 WP_004897733.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38987.46 Da        Isoelectric Point: 5.6252

>NTDB_id=413336 GTO82_RS06680 WP_004897730.1 1408333..1409415(-) (recA) [Lactobacillus johnsonii strain 3DG]
MAKDDKKKALDIALKKIEKDFGKGAVMRMGEKVDTQISTIPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGDMG
DSHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQGSDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDMAADKDIIKKAGSWYSYGDDRIGQGRENAKQYLEEHPDVYEEVK
EKVREAYGIDAKAIEERENPEKVKQDKEVPVNKDASDEKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=413336 GTO82_RS06680 WP_004897730.1 1408333..1409415(-) (recA) [Lactobacillus johnsonii strain 3DG]
TTGGCTAAAGATGATAAAAAGAAGGCTTTAGACATTGCCTTAAAGAAGATTGAAAAAGACTTTGGAAAAGGCGCAGTGAT
GCGCATGGGTGAAAAAGTAGACACTCAAATTTCCACTATTCCTTCCGGTTCACTAGCTTTAGATGCAGCTCTTGGAGTTG
GTGGCTATCCTCGTGGACGAATTATTGAAGTATATGGACCAGAAAGTTCTGGTAAAACAACTGTGGCTCTTCATGCTGTT
GCAGAAGTTCAGAAGCGTGGAGGAACGGCAGCTTATATCGATGCGGAAAATGCGATGGATCCTGCTTATGCCGAAGCATT
AGGTGTTGATATTGATTCCTTAATTTTATCTCAACCAAACACTGGTGAAGAAGGTCTGCAAATTGCAGATACGCTTATTG
CGAGTGGTGCAATTGATATCTTAGTTGTAGATTCCGTGGCAGCCTTAGTGCCAAGAGCCGAAATTGACGGTGACATGGGA
GATTCACATGTTGGTTTACAAGCCAGATTAATGAGTCAGGCTTTACGTAAACTCTCAGGAAATATCTCTAAAACTAAAAC
TATTGCTGTTTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGAAATCCAGAAACTACTCCTGGTGGACGTG
CTTTGAAGTTTTACTCTACGATTAGATTAGAAGTACGTAGAGCAGAACAAATTAAACAAGGATCAGACGTAATTGGTAAC
CGAGTTAAATTAAAGGTTGTAAAAAATAAAGTTGCTCCTCCATTTAAAGTGGCAGAAGTCGATATCATGTATGGGAAAGG
AATTTCTCAAACTGGTGAGTTAATTGATATGGCTGCTGATAAAGATATCATTAAGAAAGCTGGCTCGTGGTATTCATATG
GGGATGATCGCATTGGACAAGGCCGCGAGAATGCTAAGCAATATCTAGAAGAGCATCCTGATGTTTACGAAGAAGTAAAA
GAAAAAGTTCGTGAAGCTTATGGAATTGATGCTAAAGCAATTGAAGAACGAGAAAATCCTGAAAAGGTAAAACAGGACAA
GGAAGTACCAGTAAACAAAGATGCTTCCGATGAAAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D9N7K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.602

99.722

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

73.03

91.667

0.669
  recA Streptococcus pneumoniae D39

65.278

100

0.653
  recA Streptococcus pneumoniae R6

65.278

100

0.653
  recA Streptococcus pneumoniae TIGR4

65.278

100

0.653
  recA Streptococcus pneumoniae Rx1

65.278

100

0.653
  recA Streptococcus mutans UA159

66.011

98.889

0.653
  recA Streptococcus mitis NCTC 12261

66.571

96.389

0.642
  recA Streptococcus pyogenes NZ131

70.213

91.389

0.642
  recA Streptococcus mitis SK321

68.693

91.389

0.628
  recA Lactococcus lactis subsp. cremoris KW2

67.173

91.389

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

91.111

0.575
  recA Neisseria gonorrhoeae strain FA1090

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Neisseria gonorrhoeae MS11

61.261

92.5

0.567
  recA Acinetobacter baumannii D1279779

57.602

95

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

89.722

0.539
  recA Pseudomonas stutzeri DSM 10701

54.237

98.333

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

91.389

0.531
  recA Acinetobacter baylyi ADP1

59.317

89.444

0.531
  recA Helicobacter pylori 26695

58.589

90.556

0.531
  recA Helicobacter pylori strain NCTC11637

58.589

90.556

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.832

89.444

0.508
  recA Vibrio cholerae strain A1552

56.832

89.444

0.508
  recA Glaesserella parasuis strain SC1401

54.985

91.944

0.506
  recA Ralstonia pseudosolanacearum GMI1000

58.147

86.944

0.506

Multiple sequence alignment