Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | H5409_RS24970 | Genome accession | NZ_CP060086 |
| Coordinates | 5410061..5410933 (+) | Length | 290 a.a. |
| NCBI ID | WP_121382106.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain JNQH-PA57 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5405061..5415933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5409_RS24940 (H5409_24940) | - | 5405119..5405361 (+) | 243 | WP_023109353.1 | hypothetical protein | - |
| H5409_RS24950 (H5409_24950) | - | 5405604..5406302 (-) | 699 | WP_023120877.1 | hypothetical protein | - |
| H5409_RS24955 (H5409_24955) | pilE | 5406366..5406905 (-) | 540 | WP_003116248.1 | pilin | Machinery gene |
| H5409_RS24960 (H5409_24960) | pilB | 5407134..5408837 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| H5409_RS24965 (H5409_24965) | pilC | 5408841..5410058 (+) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| H5409_RS24970 (H5409_24970) | pilD | 5410061..5410933 (+) | 873 | WP_121382106.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| H5409_RS24975 (H5409_24975) | coaE | 5410930..5411541 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| H5409_RS24980 (H5409_24980) | yacG | 5411538..5411738 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| H5409_RS24985 (H5409_24985) | - | 5411775..5411984 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| H5409_RS24990 (H5409_24990) | - | 5412090..5412779 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| H5409_RS24995 (H5409_24995) | - | 5412776..5413246 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| H5409_RS25000 (H5409_25000) | - | 5413243..5413668 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| H5409_RS25005 (H5409_25005) | - | 5413801..5414430 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| H5409_RS25010 (H5409_25010) | - | 5414427..5414876 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| H5409_RS25015 (H5409_25015) | - | 5414902..5415072 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31886.86 Da Isoelectric Point: 7.3454
>NTDB_id=413336 H5409_RS24970 WP_121382106.1 5410061..5410933(+) (pilD) [Pseudomonas aeruginosa strain JNQH-PA57]
MELLDYLASHPQAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPQAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=413336 H5409_RS24970 WP_121382106.1 5410061..5410933(+) (pilD) [Pseudomonas aeruginosa strain JNQH-PA57]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCAGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCAGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.017 |
99.655 |
0.548 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.189 |
91.379 |
0.459 |