Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H6S61_RS08665 Genome accession   NZ_CP060047
Coordinates   1722641..1724164 (-) Length   507 a.a.
NCBI ID   WP_185890254.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2497-87     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1717641..1729164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H6S61_RS08645 (H6S61_08645) - 1718928..1719914 (+) 987 WP_038964752.1 serine/threonine protein kinase -
  H6S61_RS08650 (H6S61_08650) - 1719947..1720552 (+) 606 WP_017789622.1 thiol:disulfide interchange protein DsbA/DsbL -
  H6S61_RS08655 (H6S61_08655) - 1720604..1721485 (-) 882 WP_039469752.1 acyltransferase -
  H6S61_RS08660 (H6S61_08660) - 1721628..1722602 (+) 975 WP_017419857.1 DUF2860 domain-containing protein -
  H6S61_RS08665 (H6S61_08665) comM 1722641..1724164 (-) 1524 WP_185890254.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H6S61_RS08670 (H6S61_08670) ilvG 1724634..1726280 (+) 1647 WP_011079066.1 acetolactate synthase 2 catalytic subunit -
  H6S61_RS08675 (H6S61_08675) ilvM 1726292..1726576 (+) 285 WP_011079065.1 acetolactate synthase 2 small subunit -
  H6S61_RS08680 (H6S61_08680) ilvE 1726588..1727526 (+) 939 WP_011079064.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54696.93 Da        Isoelectric Point: 8.8059

>NTDB_id=412731 H6S61_RS08665 WP_185890254.1 1722641..1724164(-) (comM) [Vibrio vulnificus strain 2497-87]
MGLAIIHSRASVGVEAPSVSVEVHISNGLPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQISVQFLQQHEFVGELALSGELRAVKGVLPAALAAKGVSRSLVVPHANGDQAALVGKNMHKSACSL
IEVCAHLCGQQALSLHQIKQALQPSSHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSE
EEAMETAAVASLTQSDINEHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAVVKERVAQARERMQLRNGKVNALLGSREIEAFCPLSKQDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGAPQ
ITRAHLAEALGYRAMDRLLKQLTLQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=412731 H6S61_RS08665 WP_185890254.1 1722641..1724164(-) (comM) [Vibrio vulnificus strain 2497-87]
ATGGGGTTGGCGATTATTCATAGCCGTGCCAGTGTGGGCGTCGAAGCGCCTTCCGTGAGCGTGGAAGTGCACATCAGTAA
CGGCTTACCGGGATTTACCTTGGTTGGGTTGCCGGAAACCACCGTAAAGGAATCAAAAGATCGCGTACGCAGTGCGATCG
TCAACAGCAACTTTCAATTTCCAGCTAAGCGGATCACCGTCAACTTGGCGCCCGCCGATCTGCCCAAAGAAGGGGGGCGC
TTTGATTTGCCGATTGCACTCGGTATTTTAGCCGCTTCTGAGCAGATCTCCGTTCAGTTTCTCCAGCAACATGAATTTGT
CGGTGAGTTAGCCTTAAGTGGTGAGCTACGAGCGGTGAAAGGGGTTTTGCCAGCCGCTCTTGCCGCCAAAGGGGTCTCCC
GCAGTTTGGTGGTACCTCATGCGAATGGGGATCAAGCCGCCTTGGTGGGCAAGAACATGCATAAGTCGGCGTGTTCGCTG
ATTGAAGTTTGTGCCCATTTATGTGGCCAGCAAGCCCTGTCATTACATCAAATCAAGCAAGCATTGCAGCCCTCATCACA
TGGTCGAGATTTACAAGACATCATTGGTCAACAACAAGGAAAGCGAGCGCTAGAAATTGCAGCGGCAGGCAATCACAATT
TGCTGTTTTTAGGGCCTCCTGGGACCGGAAAAACCATGCTGGCGTCACGTTTGCGAGATTTGTTGCCTGAAATGAGTGAG
GAAGAGGCGATGGAAACGGCAGCGGTGGCTTCTTTAACACAAAGCGATATCAACGAGCACAATTGGAAGCTGCGGCCATT
TCGCGCGCCGCATCACTCGAGTTCTATGGCGGCGCTGGTGGGCGGTGGAACCATTCCGCGTCCCGGAGAAATCTCACTTG
CCCACAATGGCTTACTGTTTTTGGATGAGATGCCGGAATTTGAGCGCAAAGTGCTCGACTCAATGCGTGAACCGCTAGAG
TCAGGGGAAATCATCATTTCACGAGCACAAGGTAAAACTCGTTTTCCTGCTCGCTTTCAGTTGGTCGGTGCGTTGAATCC
GAGCCCAACGGGCTATTACGAAGGGAACCAAGCTCGCGCCAATCCTCAGGCGATTTTGCGTTATTTAGGCCGTTTATCGG
GCCCACTGTTGGATCGTTTTGATATGTCACTCGAGATCCCTGCATTACCCAAAGGTACATTGGCGGAAGGGGGGGACCGA
GGTGAACCAACGGCGGTGGTGAAGGAGCGAGTGGCGCAGGCGAGAGAGCGTATGCAGCTTCGTAATGGCAAGGTGAATGC
TCTGTTAGGCAGCCGAGAAATCGAAGCGTTTTGCCCATTGAGTAAGCAAGATGCCGAGTTTCTTGAAACGGCGTTGCACC
GTTTAGGATTATCGATTCGCGCTTATCACCGCATCATCAAAGTGGCGCGAACCATTGCCGATTTAGAAGGCGCACCTCAG
ATAACGCGTGCACACTTAGCCGAAGCACTCGGTTATCGGGCGATGGATCGCTTGCTCAAACAGTTAACTCTGCAAGCGGT
TTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

88.166

100

0.882
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.418

100

0.844
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.648

99.803

0.625
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  comM Acinetobacter baylyi ADP1

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.913

100

0.43