Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GSY53_RS12390 Genome accession   NZ_CP047325
Coordinates   2421273..2422067 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain GOT9     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2416273..2427067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS12360 (GSY53_12360) sxzA 2417112..2418143 (+) 1032 WP_003243057.1 iron ABC transporter permease -
  GSY53_RS12365 (GSY53_12365) yfhB 2418258..2419139 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  GSY53_RS12370 (GSY53_12370) yfhC 2419227..2419811 (+) 585 WP_003243940.1 nitroreductase -
  GSY53_RS12375 (GSY53_12375) yfhD 2419850..2420041 (-) 192 WP_003233561.1 YfhD family protein -
  GSY53_RS12380 (GSY53_12380) yfhE 2420108..2420218 (-) 111 WP_003223230.1 YfhE family protein -
  GSY53_RS12385 (GSY53_12385) yfhF 2420273..2421184 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  GSY53_RS12390 (GSY53_12390) recX 2421273..2422067 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  GSY53_RS12395 (GSY53_12395) yfhH 2422069..2422383 (+) 315 WP_003244592.1 YfhH family protein -
  GSY53_RS12400 (GSY53_12400) yfhI 2422526..2423719 (+) 1194 WP_003243500.1 MFS transporter -
  GSY53_RS12405 (GSY53_12405) sspK 2423752..2423904 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GSY53_RS12410 (GSY53_12410) yfhJ 2424029..2424298 (+) 270 WP_003243789.1 YfhJ family protein -
  GSY53_RS12415 (GSY53_12415) yfhK 2424443..2424961 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  GSY53_RS12420 (GSY53_12420) spdL 2425046..2425378 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  GSY53_RS12425 (GSY53_12425) ephM 2425365..2426225 (+) 861 WP_159357106.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=412717 GSY53_RS12390 WP_003243354.1 2421273..2422067(+) (recX) [Bacillus subtilis strain GOT9]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=412717 GSY53_RS12390 WP_003243354.1 2421273..2422067(+) (recX) [Bacillus subtilis strain GOT9]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment