Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GQY28_RS16555 Genome accession   NZ_CP047285
Coordinates   3351333..3351929 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain Y3-10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3346333..3356929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY28_RS16540 (GQY28_16175) helD 3346541..3348595 (-) 2055 WP_004179218.1 DNA helicase IV -
  GQY28_RS16545 (GQY28_16180) - 3348720..3349166 (+) 447 WP_002898425.1 YccF domain-containing protein -
  GQY28_RS16550 (GQY28_16185) yccS 3349184..3351319 (+) 2136 WP_002898422.1 YccS family putative transporter -
  GQY28_RS16555 (GQY28_16190) sxy/tfoX 3351333..3351929 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  GQY28_RS16560 (GQY28_16195) sulA 3352278..3352787 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  GQY28_RS16565 (GQY28_16200) ompA 3353140..3354210 (+) 1071 WP_002898408.1 porin OmpA -
  GQY28_RS16570 (GQY28_16205) matP 3354342..3354794 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  GQY28_RS16575 (GQY28_16210) - 3354980..3356737 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=412244 GQY28_RS16555 WP_004150836.1 3351333..3351929(-) (sxy/tfoX) [Klebsiella pneumoniae strain Y3-10]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=412244 GQY28_RS16555 WP_004150836.1 3351333..3351929(-) (sxy/tfoX) [Klebsiella pneumoniae strain Y3-10]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment