Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   H5J27_RS30335 Genome accession   NZ_CP059995
Coordinates   6424825..6425349 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NY3045     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6419825..6430349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5J27_RS30320 (H5J27_30320) aroB 6420941..6422047 (-) 1107 WP_033977028.1 3-dehydroquinate synthase -
  H5J27_RS30325 (H5J27_30325) aroK 6422097..6422615 (-) 519 WP_003095833.1 shikimate kinase AroK -
  H5J27_RS30330 (H5J27_30330) pilQ 6422627..6424771 (-) 2145 WP_042170908.1 type 4a pilus secretin PilQ Machinery gene
  H5J27_RS30335 (H5J27_30335) comL/pilP 6424825..6425349 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  H5J27_RS30340 (H5J27_30340) pilO 6425346..6425969 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  H5J27_RS30345 (H5J27_30345) pilN 6425966..6426562 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  H5J27_RS30350 (H5J27_30350) pilM 6426562..6427626 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  H5J27_RS30355 (H5J27_30355) - 6427811..6430282 (+) 2472 WP_033977033.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=412241 H5J27_RS30335 WP_003095836.1 6424825..6425349(-) (comL/pilP) [Pseudomonas aeruginosa strain NY3045]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=412241 H5J27_RS30335 WP_003095836.1 6424825..6425349(-) (comL/pilP) [Pseudomonas aeruginosa strain NY3045]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCTT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACTCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362