Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCO26_RS15245 Genome accession   NC_015634
Coordinates   3054139..3054639 (-) Length   166 a.a.
NCBI ID   WP_013860884.1    Uniprot ID   -
Organism   Heyndrickxia coagulans 2-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3049139..3059639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCO26_RS15225 (BCO26_2951) rplI 3050307..3050750 (-) 444 WP_013860880.1 50S ribosomal protein L9 -
  BCO26_RS15230 (BCO26_2952) - 3050747..3052720 (-) 1974 WP_013860881.1 DHH family phosphoesterase -
  BCO26_RS15235 (BCO26_2953) - 3052756..3053697 (-) 942 WP_148256267.1 YybS family protein -
  BCO26_RS15240 (BCO26_2954) rpsR 3053855..3054094 (-) 240 WP_013860883.1 30S ribosomal protein S18 -
  BCO26_RS15245 (BCO26_2955) ssbA 3054139..3054639 (-) 501 WP_013860884.1 single-stranded DNA-binding protein Machinery gene
  BCO26_RS15250 (BCO26_2956) rpsF 3054701..3054988 (-) 288 WP_013860885.1 30S ribosomal protein S6 -
  BCO26_RS15255 (BCO26_2957) ribE 3055246..3055716 (-) 471 WP_013860886.1 6,7-dimethyl-8-ribityllumazine synthase -
  BCO26_RS15260 (BCO26_2958) - 3055729..3056922 (-) 1194 WP_013860887.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  BCO26_RS15265 (BCO26_2959) - 3056940..3057587 (-) 648 WP_013860888.1 riboflavin synthase -
  BCO26_RS15270 (BCO26_2960) ribD 3057568..3058689 (-) 1122 WP_013860889.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18740.41 Da        Isoelectric Point: 4.6529

>NTDB_id=41206 BCO26_RS15245 WP_013860884.1 3054139..3054639(-) (ssbA) [Heyndrickxia coagulans 2-6]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
NYEAQDGRRVYVTEVVAESVQFLEPRSANQERNSSQNYGNNQGNAFPGYNQDQNQNQRNQSYSKPDEDPFSNDGQPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=41206 BCO26_RS15245 WP_013860884.1 3054139..3054639(-) (ssbA) [Heyndrickxia coagulans 2-6]
ATGTTGAACCGTGTTGTTCTCGTAGGCAGGCTGACAAAAGATCCCGATTTGCGCTATACGCCGAGCGGAGTAGCGGTTGC
TACTTTTACCCTGGCTGTAAACCGTACGTTTACCAACCAGCAGGGGGAAAGGGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAACAGGCTGAAAATGTGGCCAACTACTTGAAAAAAGGAAGTCTGGCAGGCGTAGACGGCCGGATTCAGACACGC
AACTACGAAGCCCAGGATGGCCGGCGCGTGTATGTCACAGAGGTCGTGGCAGAAAGCGTCCAGTTTCTTGAACCGAGAAG
CGCGAATCAGGAACGCAACAGCAGCCAGAATTACGGGAACAACCAAGGGAATGCTTTCCCGGGGTACAACCAGGATCAAA
ACCAGAATCAGCGCAATCAAAGTTATTCAAAGCCGGATGAAGATCCGTTCTCAAATGATGGACAACCAATTGACATCTCT
GATGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.886

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

63.855

0.416
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373
  ssb Neisseria meningitidis MC58

34.286

100

0.361
  ssb Vibrio cholerae strain A1552

33.333

100

0.361

Multiple sequence alignment