Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GSF12_RS11705 Genome accession   NZ_CP047226
Coordinates   2568632..2570125 (+) Length   497 a.a.
NCBI ID   WP_159375589.1    Uniprot ID   A0A6P1KFP9
Organism   Moraxella osloensis strain YV1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2563632..2575125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF12_RS11675 (GSF12_11675) - 2564073..2564429 (-) 357 WP_159375583.1 hypothetical protein -
  GSF12_RS11680 (GSF12_11680) - 2564472..2564855 (-) 384 WP_159375584.1 HNH endonuclease -
  GSF12_RS11685 (GSF12_11685) - 2564963..2565535 (+) 573 WP_159375585.1 DUF4442 domain-containing protein -
  GSF12_RS11690 (GSF12_11690) - 2565546..2566151 (-) 606 WP_159375586.1 class I SAM-dependent methyltransferase -
  GSF12_RS11695 (GSF12_11695) - 2566169..2566831 (-) 663 WP_159375587.1 Abi family protein -
  GSF12_RS11700 (GSF12_11700) hemN 2566945..2568423 (-) 1479 WP_159375588.1 oxygen-independent coproporphyrinogen III oxidase -
  GSF12_RS11705 (GSF12_11705) comM 2568632..2570125 (+) 1494 WP_159375589.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GSF12_RS11710 (GSF12_11710) - 2570165..2570725 (-) 561 WP_159375590.1 DUF4385 domain-containing protein -
  GSF12_RS11715 (GSF12_11715) - 2570712..2571446 (-) 735 WP_159375591.1 phosphoglycolate phosphatase -
  GSF12_RS11720 (GSF12_11720) phoU 2571587..2572357 (-) 771 WP_159375592.1 phosphate signaling complex protein PhoU -
  GSF12_RS11725 (GSF12_11725) pstS 2572704..2573708 (+) 1005 WP_159375593.1 phosphate ABC transporter substrate-binding protein PstS -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53971.51 Da        Isoelectric Point: 8.0023

>NTDB_id=411616 GSF12_RS11705 WP_159375589.1 2568632..2570125(+) (comM) [Moraxella osloensis strain YV1]
MSFSQVYTRSVVGLNAPSVMVEVHLSQGLPAVTMVGLPEAAVRESKDRVRSAIINSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQIDETVLAQYEFIGELALNGDLRGIAGALAVSRALKVDRRILIVPKDNADEAVKVDGVKVLQADTL
KAVCQHLMNEQQLSQAEHKTSYQSANYQLDLADVKGQHQARRALEIAAAGGHSLLFCGSPGTGKTLMASRLPTILPPLND
HEALEVASIYSIANSDYDYGTRPFRQVHHTTSAVALVGGGSSPKPGEITLANRGVLFLDEIPEFDRKVLEVLRQPIENKE
IVISRANSQVRFPANFQLVAAMNPCPCGYYGDKSGRCQCRPEQIKRYQEKLSGPLLDRIDLHITVPALPASDLQSAQKGE
SSAVVRERVIQAYQRQQARQGKANNELSPSELDQFAPLGDAESRILAMAQSRLNLSARGYHRVLRVARTIADLAGSEVIQ
TAHLTEALSYRSQLTNA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=411616 GSF12_RS11705 WP_159375589.1 2568632..2570125(+) (comM) [Moraxella osloensis strain YV1]
ATGTCGTTTTCTCAAGTATATACGCGCTCGGTAGTAGGTTTAAACGCGCCAAGCGTGATGGTTGAAGTACATTTATCGCA
AGGATTGCCCGCAGTCACCATGGTTGGCTTACCCGAAGCAGCGGTACGCGAGAGTAAAGATAGGGTGCGCTCCGCCATTA
TCAACTCGGGTTTTCAATTTCCCAATCGCAGATTAACCATCAACCTTGCGCCCGCGGATTTACCCAAAGATGGCGCACGG
CTTGATTTGCCCATTGCTATAGGTATCTTGGCAGCCAGCGGGCAAATTGATGAAACCGTGCTTGCGCAGTACGAGTTTAT
TGGCGAATTGGCGCTCAATGGCGATTTACGAGGCATTGCTGGGGCGTTGGCCGTATCACGTGCGCTCAAGGTAGACCGAC
GCATCTTAATTGTTCCCAAAGACAATGCCGATGAAGCGGTCAAAGTCGATGGCGTGAAGGTGTTGCAAGCCGACACCCTC
AAAGCTGTGTGCCAACACTTGATGAACGAGCAACAACTCAGCCAAGCCGAGCATAAGACATCTTACCAATCAGCCAATTA
TCAGCTAGATTTAGCCGATGTCAAAGGACAACACCAAGCCAGACGTGCGCTAGAGATTGCGGCAGCAGGCGGACATTCGC
TACTATTTTGTGGCTCACCTGGGACAGGCAAAACCTTGATGGCATCTCGCCTACCCACCATTTTGCCACCGCTTAATGAC
CATGAAGCGCTTGAAGTTGCCAGTATCTACTCGATTGCCAACAGTGATTATGACTACGGCACACGCCCCTTTCGCCAAGT
CCATCATACTACCTCAGCAGTGGCGCTAGTGGGAGGCGGCTCGTCGCCCAAACCCGGTGAAATCACGCTCGCCAATCGGG
GGGTGTTATTTTTGGATGAGATTCCAGAGTTTGATCGCAAGGTGCTTGAGGTACTCAGACAGCCCATTGAGAACAAAGAA
ATTGTCATCAGCCGTGCCAACTCTCAAGTACGCTTTCCTGCCAATTTTCAGCTGGTAGCAGCGATGAATCCCTGCCCCTG
TGGCTACTATGGGGATAAATCAGGTCGCTGCCAGTGTCGACCTGAGCAAATCAAACGCTATCAAGAAAAGCTATCGGGAC
CTTTGCTGGACCGTATTGATTTGCATATTACCGTGCCTGCGCTGCCTGCCAGTGATTTGCAGTCAGCACAGAAGGGTGAA
TCTTCTGCGGTAGTGCGTGAGCGGGTGATACAAGCCTATCAGCGTCAGCAAGCCAGACAGGGCAAAGCCAATAATGAACT
CTCCCCCAGTGAACTTGACCAATTTGCACCGCTTGGCGATGCAGAAAGTCGTATTTTGGCAATGGCACAAAGTCGGCTGA
ATCTGTCCGCTCGCGGCTATCATCGCGTCCTTCGCGTCGCCCGCACGATTGCAGACTTGGCAGGCAGTGAAGTAATCCAA
ACCGCGCATCTGACAGAGGCACTCAGTTATCGTAGTCAATTAACAAATGCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1KFP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.823

99.799

0.527
  comM Glaesserella parasuis strain SC1401

52.2

100

0.525
  comM Vibrio campbellii strain DS40M4

52.419

99.799

0.523
  comM Haemophilus influenzae Rd KW20

51.394

100

0.519
  comM Legionella pneumophila str. Paris

51.303

100

0.515
  comM Legionella pneumophila strain ERS1305867

51.303

100

0.515
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.91

100

0.453

Multiple sequence alignment