Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   H5C78_RS23995 Genome accession   NZ_CP059917
Coordinates   4966484..4968004 (-) Length   506 a.a.
NCBI ID   WP_000058985.1    Uniprot ID   -
Organism   Escherichia coli strain 64.1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4961484..4973004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5C78_RS23985 (H5C78_23985) hdfR 4965163..4966002 (-) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -
  H5C78_RS23990 (H5C78_23990) maoP 4966121..4966459 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  H5C78_RS23995 (H5C78_23995) comM 4966484..4968004 (-) 1521 WP_000058985.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  H5C78_RS24000 (H5C78_24000) ilvL 4968357..4968455 (+) 99 WP_001311244.1 ilv operon leader peptide -
  H5C78_RS24005 (H5C78_24005) ilvX 4968542..4968592 (+) 51 WP_001387183.1 peptide IlvX -
  H5C78_RS24010 (H5C78_24010) ilvG 4968595..4970241 (+) 1647 WP_001012580.1 acetolactate synthase 2 catalytic subunit -
  H5C78_RS24015 (H5C78_24015) ilvM 4970238..4970501 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  H5C78_RS24020 (H5C78_24020) ilvE 4970521..4971450 (+) 930 WP_000208520.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55215.31 Da        Isoelectric Point: 7.6191

>NTDB_id=411585 H5C78_RS23995 WP_000058985.1 4966484..4968004(-) (comM) [Escherichia coli strain 64.1]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKHALERPKPTNAVSRAQQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=411585 H5C78_RS23995 WP_000058985.1 4966484..4968004(-) (comM) [Escherichia coli strain 64.1]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCAGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTGCCTATCGCTATTGCGTTACTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGCGCGTTTCTGGAGGGTAAGCACGCTCTCGAACGCCCGAAACCAACTAATGCAGTATCCCGGGCGCAACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTTTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCAGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAACTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGGCTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCACCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGATGCGCAGTGGCTGGAAGAAACGCTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCCGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCCATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.708

100

0.593
  comM Glaesserella parasuis strain SC1401

58.058

100

0.591
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Vibrio cholerae O1 biovar El Tor strain E7946

59.363

99.209

0.589
  comM Vibrio campbellii strain DS40M4

58.167

99.209

0.577
  comM Acinetobacter baylyi ADP1

48.996

98.419

0.482
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.443