Detailed information NTG0411388

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: GQY29_RS04115
• Genome accession: NZ_CP047191
• Coordinates: 756558..756995 (+)
• Length: 145 a.a.
• NCBI ID: WP_084825661.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain EU01
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 751558..761995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQY29_RS04085 (GQY29_04085)	-	753232..753594 (+)	363	WP_023909982.1	DUF1033 family protein	-
GQY29_RS04090 (GQY29_04090)	comYA	753675..754616 (+)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
GQY29_RS04095 (GQY29_04095)	comYB	754498..755598 (+)	1101	WP_159340986.1	competence type IV pilus assembly protein ComGB	Machinery gene
GQY29_RS04100 (GQY29_04100)	comYC	755595..755921 (+)	327	WP_023909980.1	competence type IV pilus major pilin ComGC	Machinery gene
GQY29_RS04105 (GQY29_04105)	comYD	755881..756309 (+)	429	WP_171815055.1	competence type IV pilus minor pilin ComGD	Machinery gene
GQY29_RS04110 (GQY29_04110)	comGE	756281..756574 (+)	294	WP_023909978.1	competence type IV pilus minor pilin ComGE	-
GQY29_RS04115 (GQY29_04115)	comYF	756558..756995 (+)	438	WP_084825661.1	competence type IV pilus minor pilin ComGF	Machinery gene
GQY29_RS04120 (GQY29_04120)	comGG	756973..757290 (+)	318	WP_023909975.1	competence type IV pilus minor pilin ComGG	-
GQY29_RS04125 (GQY29_04125)	comYH	757335..758291 (+)	957	WP_023909974.1	class I SAM-dependent methyltransferase	Machinery gene
GQY29_RS04130 (GQY29_04130)	-	758347..759540 (+)	1194	WP_084825660.1	acetate kinase	-
GQY29_RS04135 (GQY29_04135)	-	759788..759985 (+)	198	WP_159340988.1	helix-turn-helix transcriptional regulator	-
GQY29_RS10680 (GQY29_04140)	-	759997..760272 (+)	276	WP_100273190.1	CAAX protease	-
GQY29_RS10685 (GQY29_04145)	-	760316..760654 (+)	339	WP_228024408.1	CPBP family intramembrane glutamic endopeptidase	-
GQY29_RS04150 (GQY29_04150)	-	760728..761171 (+)	444	WP_041829335.1	hypothetical protein	-
GQY29_RS04155 (GQY29_04155)	-	761268..761930 (+)	663	WP_084826165.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16345.87 Da
• Isoelectric Point: 9.3928

>NTDB_id=411388 GQY29_RS04115 WP_084825661.1 756558..756995(+) (comYF) [Streptococcus thermophilus strain EU01]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKRVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRSFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=411388 GQY29_RS04115 WP_084825661.1 756558..756995(+) (comYF) [Streptococcus thermophilus strain EU01]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTAGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCGGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAGTTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (40-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae Rx1	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae R6	50.714	96.552	0.49
comGF/cglF	Streptococcus pneumoniae TIGR4	50.714	96.552	0.49
comGF/cglF	Streptococcus mitis NCTC 12261	48.936	97.241	0.476
comGF/cglF	Streptococcus mitis SK321	48.227	97.241	0.469
comGF	Lactococcus lactis subsp. cremoris KW2	46.763	95.862	0.448