Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | GQY29_RS04125 | Genome accession | NZ_CP047191 |
| Coordinates | 757335..758291 (+) | Length | 318 a.a. |
| NCBI ID | WP_023909974.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus strain EU01 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 752335..763291
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQY29_RS04085 (GQY29_04085) | - | 753232..753594 (+) | 363 | WP_023909982.1 | DUF1033 family protein | - |
| GQY29_RS04090 (GQY29_04090) | comYA | 753675..754616 (+) | 942 | WP_014622005.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GQY29_RS04095 (GQY29_04095) | comYB | 754498..755598 (+) | 1101 | WP_159340986.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| GQY29_RS04100 (GQY29_04100) | comYC | 755595..755921 (+) | 327 | WP_023909980.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GQY29_RS04105 (GQY29_04105) | comYD | 755881..756309 (+) | 429 | WP_171815055.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GQY29_RS04110 (GQY29_04110) | comGE | 756281..756574 (+) | 294 | WP_023909978.1 | competence type IV pilus minor pilin ComGE | - |
| GQY29_RS04115 (GQY29_04115) | comYF | 756558..756995 (+) | 438 | WP_084825661.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| GQY29_RS04120 (GQY29_04120) | comGG | 756973..757290 (+) | 318 | WP_023909975.1 | competence type IV pilus minor pilin ComGG | - |
| GQY29_RS04125 (GQY29_04125) | comYH | 757335..758291 (+) | 957 | WP_023909974.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GQY29_RS04130 (GQY29_04130) | - | 758347..759540 (+) | 1194 | WP_084825660.1 | acetate kinase | - |
| GQY29_RS04135 (GQY29_04135) | - | 759788..759985 (+) | 198 | WP_159340988.1 | helix-turn-helix transcriptional regulator | - |
| GQY29_RS10680 (GQY29_04140) | - | 759997..760272 (+) | 276 | WP_100273190.1 | CAAX protease | - |
| GQY29_RS10685 (GQY29_04145) | - | 760316..760654 (+) | 339 | WP_228024408.1 | CPBP family intramembrane glutamic endopeptidase | - |
| GQY29_RS04150 (GQY29_04150) | - | 760728..761171 (+) | 444 | WP_041829335.1 | hypothetical protein | - |
| GQY29_RS04155 (GQY29_04155) | - | 761268..761930 (+) | 663 | WP_084826165.1 | type II CAAX endopeptidase family protein | - |
| GQY29_RS04160 (GQY29_04160) | proC | 761960..762730 (-) | 771 | WP_011226616.1 | pyrroline-5-carboxylate reductase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35916.03 Da Isoelectric Point: 4.6046
>NTDB_id=411389 GQY29_RS04125 WP_023909974.1 757335..758291(+) (comYH) [Streptococcus thermophilus strain EU01]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKIRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQEDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKDAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKIRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQEDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKDAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=411389 GQY29_RS04125 WP_023909974.1 757335..758291(+) (comYH) [Streptococcus thermophilus strain EU01]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAAATACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGAGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGACGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAGATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAAATACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGAGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGACGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAGATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
69.206 |
99.057 |
0.686 |
| comYH | Streptococcus mutans UA140 |
69.206 |
99.057 |
0.686 |