Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D1605_RS03310 | Genome accession | NZ_CP047171 |
| Coordinates | 782892..783386 (+) | Length | 164 a.a. |
| NCBI ID | WP_004089231.1 | Uniprot ID | Q87DQ5 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain IVIA5235 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 777892..788386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1605_RS03295 (D1605_003375) | cyoB | 778221..780218 (-) | 1998 | WP_004083794.1 | cytochrome o ubiquinol oxidase subunit I | - |
| D1605_RS03300 (D1605_003380) | cyoA | 780212..781171 (-) | 960 | WP_011097726.1 | ubiquinol oxidase subunit II | - |
| D1605_RS03305 (D1605_003385) | - | 781640..782641 (-) | 1002 | WP_004083792.1 | polyprenyl synthetase family protein | - |
| D1605_RS03310 (D1605_003390) | ssb | 782892..783386 (+) | 495 | WP_004089231.1 | single-stranded DNA-binding protein | Machinery gene |
| D1605_RS03315 (D1605_003395) | - | 783662..783826 (+) | 165 | WP_014607674.1 | hypothetical protein | - |
| D1605_RS03320 (D1605_003400) | - | 785035..785946 (+) | 912 | WP_004089229.1 | class I SAM-dependent methyltransferase | - |
| D1605_RS03325 (D1605_003405) | - | 786259..787455 (+) | 1197 | WP_024749296.1 | cation:proton antiporter | - |
| D1605_RS03330 (D1605_003410) | gloA | 787616..788143 (-) | 528 | WP_004089226.1 | lactoylglutathione lyase | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18227.20 Da Isoelectric Point: 5.9527
>NTDB_id=411283 D1605_RS03310 WP_004089231.1 782892..783386(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=411283 D1605_RS03310 WP_004089231.1 782892..783386(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain IVIA5235]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGCGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.53 |
| ssb | Glaesserella parasuis strain SC1401 |
46.927 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
41.618 |
100 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.433 |