Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GRQ40_RS18160 Genome accession   NZ_CP047158
Coordinates   3774389..3774883 (-) Length   164 a.a.
NCBI ID   WP_044745160.1    Uniprot ID   A0A160F8E7
Organism   Anoxybacillus sp. PDR2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3769389..3779883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRQ40_RS18140 (GRQ40_18140) rplI 3770568..3771017 (-) 450 WP_044745163.1 50S ribosomal protein L9 -
  GRQ40_RS18145 (GRQ40_18145) - 3771014..3772987 (-) 1974 WP_080862679.1 DHH family phosphoesterase -
  GRQ40_RS18150 (GRQ40_18150) - 3773026..3773955 (-) 930 WP_066150801.1 YybS family protein -
  GRQ40_RS18155 (GRQ40_18155) rpsR 3774024..3774260 (-) 237 WP_027408127.1 30S ribosomal protein S18 -
  GRQ40_RS18160 (GRQ40_18160) ssbA 3774389..3774883 (-) 495 WP_044745160.1 single-stranded DNA-binding protein Machinery gene
  GRQ40_RS18165 (GRQ40_18165) rpsF 3774911..3775198 (-) 288 WP_066150806.1 30S ribosomal protein S6 -
  GRQ40_RS18170 (GRQ40_18170) ychF 3775304..3776404 (-) 1101 WP_159720993.1 redox-regulated ATPase YchF -
  GRQ40_RS18175 (GRQ40_18175) - 3776475..3778484 (-) 2010 WP_066150809.1 molybdopterin-dependent oxidoreductase -
  GRQ40_RS18180 (GRQ40_18180) - 3778523..3778717 (-) 195 WP_044745156.1 DUF951 domain-containing protein -
  GRQ40_RS18185 (GRQ40_18185) - 3778732..3779622 (-) 891 WP_066150812.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18252.17 Da        Isoelectric Point: 4.8215

>NTDB_id=411229 GRQ40_RS18160 WP_044745160.1 3774389..3774883(-) (ssbA) [Anoxybacillus sp. PDR2]
MINRVILVGRLTRDPELRYTPSGVAVATFTLAVNRPFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQTR
SYEGQDGKRVYVTEVVADSVQFLEPKGSTEQRGAATGGYYGEPYPFGQNQNPRHTTDPGYSRIDEDPFAHDGQPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=411229 GRQ40_RS18160 WP_044745160.1 3774389..3774883(-) (ssbA) [Anoxybacillus sp. PDR2]
ATGATTAACCGCGTAATTCTTGTAGGGAGACTTACAAGAGACCCAGAATTGCGCTATACTCCAAGTGGAGTAGCTGTTGC
CACGTTTACATTAGCTGTTAATCGCCCGTTTACAAACCAGCAAGGCGAACGTGAAGCAGATTTTATCAATTGCGTCGTCT
GGCGTCGTCCAGCAGAGAATGTGGCGAACTTCTTAAAAAAGGGAAGCTTGGCTGGCGTGGATGGCCGTTTGCAAACGAGA
AGTTACGAAGGGCAAGATGGAAAGCGTGTGTACGTAACCGAGGTGGTTGCTGATAGTGTTCAATTTCTTGAGCCTAAAGG
TAGTACGGAACAGCGTGGTGCAGCAACAGGCGGCTATTATGGAGAGCCTTATCCATTTGGGCAAAATCAGAACCCGCGTC
ACACAACCGACCCAGGCTATAGTCGCATCGATGAGGATCCGTTTGCTCATGATGGACAGCCTATTGATATATCCGATGAC
GACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160F8E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.241

100

0.713
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.628
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

64.634

0.409
  ssb Neisseria meningitidis MC58

35.028

100

0.378
  ssb Neisseria gonorrhoeae MS11

35.028

100

0.378
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.366

Multiple sequence alignment