Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SGPB_RS02260 Genome accession   NC_015600
Coordinates   424381..425043 (+) Length   220 a.a.
NCBI ID   WP_013851531.1    Uniprot ID   A0AAW6YBE2
Organism   Streptococcus pasteurianus ATCC 43144     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419381..430043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS02235 (SGPB_0399) - 419499..420899 (+) 1401 WP_013851528.1 Cof-type HAD-IIB family hydrolase -
  SGPB_RS02240 (SGPB_0400) - 420899..421255 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  SGPB_RS02245 (SGPB_0401) cysK 421368..422297 (-) 930 WP_013851529.1 cysteine synthase A -
  SGPB_RS02250 (SGPB_0402) - 422401..423027 (-) 627 WP_013851530.1 YigZ family protein -
  SGPB_RS02255 (SGPB_0403) comFA/cflA 423083..424384 (+) 1302 WP_003063550.1 DEAD/DEAH box helicase Machinery gene
  SGPB_RS02260 (SGPB_0404) comFC/cflB 424381..425043 (+) 663 WP_013851531.1 ComF family protein Machinery gene
  SGPB_RS02265 (SGPB_0405) hpf 425119..425667 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SGPB_RS11250 - 425802..426497 (+) 696 Protein_407 transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25590.68 Da        Isoelectric Point: 9.1814

>NTDB_id=41067 SGPB_RS02260 WP_013851531.1 424381..425043(+) (comFC/cflB) [Streptococcus pasteurianus ATCC 43144]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPTCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKIPYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYETGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=41067 SGPB_RS02260 WP_013851531.1 424381..425043(+) (comFC/cflB) [Streptococcus pasteurianus ATCC 43144]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAAAAAGATGACAA
TGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCAACCTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCGTGGGAAAAACAACATCATCACGTATCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAAGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCCCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATCGATGATATTTACACAACTGGCGCCACTTTAAAGGGAATATATCAACTTTTCTATGAAACTGGAGCCAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae TIGR4

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae Rx1

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae D39

50.455

100

0.505
  comFC/cflB Streptococcus pneumoniae R6

50.455

100

0.505
  comFC/cflB Streptococcus mitis SK321

49.545

100

0.495
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364

Multiple sequence alignment