Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GQA94_RS05930 Genome accession   NZ_CP046902
Coordinates   1273869..1275980 (+) Length   703 a.a.
NCBI ID   WP_158187210.1    Uniprot ID   A0A6I6LTJ2
Organism   Stutzerimonas stutzeri strain PM101005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268869..1280980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS05910 (GQA94_05910) comM 1271037..1272101 (+) 1065 WP_158187206.1 pilus assembly protein PilM Machinery gene
  GQA94_RS05915 (GQA94_05915) pilN 1272101..1272673 (+) 573 WP_158187207.1 type 4a pilus biogenesis protein PilN -
  GQA94_RS05920 (GQA94_05920) pilO 1272670..1273293 (+) 624 WP_158187208.1 type 4a pilus biogenesis protein PilO -
  GQA94_RS05925 (GQA94_05925) pilP 1273290..1273817 (+) 528 WP_158187209.1 type 4a pilus biogenesis lipoprotein PilP -
  GQA94_RS05930 (GQA94_05930) pilQ 1273869..1275980 (+) 2112 WP_158187210.1 type IV pilus secretin PilQ family protein Machinery gene
  GQA94_RS05935 (GQA94_05935) aroK 1276012..1276530 (+) 519 WP_158190043.1 shikimate kinase AroK -
  GQA94_RS05940 (GQA94_05940) aroB 1276554..1277657 (+) 1104 WP_158187211.1 3-dehydroquinate synthase -
  GQA94_RS05945 (GQA94_05945) - 1277667..1279190 (+) 1524 WP_158187212.1 AAA family ATPase -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 75563.60 Da        Isoelectric Point: 4.7648

>NTDB_id=409220 GQA94_RS05930 WP_158187210.1 1273869..1275980(+) (pilQ) [Stutzerimonas stutzeri strain PM101005]
MNTTLSRLGLSLLAAIVSPALLAANLNSLDIASLPGDRVELKLAFDEPVPAPRGYTLDQPARIALDLPGVSSKLASKNHE
LGVGNARSVTVVEAQGRTRLIVNLTSLVPYSTRVDGSNVFVVLGESGAPSSAVTATPVAPVSKAAPVASLAAGKSISNID
FRRGDDGAGNVVITLSDPSISPNIEEQGGKIRVSFAKTQLPESLRVRLDVQDFATPVKFVDSSSKADGASIAIEPSGRYD
YLAYQTDDKLTISVKPLSEADAEKRKAEHFTYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPW
DQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKATDIAKLFQSVTAVDAQTA
ERGSIAVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKALGVRWGGNYVGDQWSAYGKDGARS
IDDDGVVRLPGTDTVGNFTLEDGVAPVPFVDMGVLGSTSGFGIGFISDHVLLDLQLSAMEKTGNGEVVSQPKVMTADKET
AKILKGTEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMDVKVTKDAPDFRNAMNGVPPIEKNEVNAKILVNDG
ETVVIGGVFSNSQTKSVDKVPFLGDVPYLGRLFRRDVVTDAKSELLVFLTPRILNHQAIAVNR

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=409220 GQA94_RS05930 WP_158187210.1 1273869..1275980(+) (pilQ) [Stutzerimonas stutzeri strain PM101005]
ATGAATACCACGCTCTCTCGTCTCGGCTTGTCCCTGCTCGCGGCAATTGTTTCGCCTGCGTTGCTGGCGGCGAATCTGAA
CTCACTCGACATCGCGTCGCTGCCCGGCGACCGCGTAGAGCTGAAGCTGGCCTTCGACGAGCCCGTACCGGCTCCGCGCG
GCTATACACTCGACCAGCCCGCTCGCATCGCGCTCGATCTGCCAGGCGTCTCCAGCAAGCTGGCATCGAAGAATCACGAG
CTCGGCGTCGGCAATGCGCGGAGTGTGACGGTAGTCGAGGCCCAGGGGCGCACCCGACTCATCGTCAACCTCACCTCGCT
CGTTCCCTATTCGACCCGGGTTGACGGCAGCAACGTATTCGTCGTGCTCGGCGAAAGCGGCGCCCCGTCCTCTGCCGTCA
CGGCCACGCCGGTCGCGCCCGTGAGCAAGGCGGCGCCGGTCGCCTCGTTGGCGGCGGGCAAGTCGATCAGCAACATCGAT
TTTCGCCGCGGGGACGATGGGGCCGGTAACGTCGTGATTACGCTGTCGGACCCGTCAATCAGTCCGAATATCGAGGAGCA
GGGCGGAAAGATTCGGGTGTCCTTCGCCAAGACCCAGCTGCCGGAATCACTACGCGTCCGGCTTGACGTGCAGGATTTCG
CGACCCCGGTCAAATTCGTCGACTCGAGCAGCAAGGCCGATGGCGCGAGTATCGCCATCGAACCTAGCGGGCGTTACGAC
TACCTTGCGTACCAGACCGACGACAAGCTCACGATCAGCGTCAAGCCGCTCAGCGAAGCCGACGCGGAGAAGCGCAAAGC
CGAGCATTTCACCTACTCGGGGGAGAAGCTGTCGCTGAACTTTCAGGACATCGACGTTCGCTCCGTTCTGCAGTTGATCG
CCGATTTTACCGACCTCAACCTCGTCGCCAGTGACACGGTCCAGGGCAACATCACGCTGCGCTTGCAGAACGTGCCCTGG
GATCAGGCGCTCGATCTGGTGTTGAAAACCAAAGGGCTCGACAAGCGCCAGGTTGGCAACGTCCTGCTGGTCGCCCCGGC
TGACGAGATCGCTGCACGGGAGCGCCAGGAGCTGGAGTCGCAGCGTCAGATCGCCGAACTGGCGCCCCTGCGGCGCGAGG
TCGTGCAGGTCAACTACGCCAAGGCGACGGATATCGCCAAGCTGTTCCAGTCGGTGACCGCCGTGGACGCTCAGACTGCA
GAACGTGGCTCGATAGCGGTTGATGAGCGTACCAATAACATCATTGCCTACCAGACGCAGGACCGTTTGGATGAGTTACG
TCGCATCGTTGCTCAATTGGACATCCCGGTTAGGCAGGTGATGATTGAGGCTCGCATCGTCGAAGCAAACGTCGATTACG
ATAAGGCGCTCGGGGTTCGTTGGGGAGGCAACTACGTAGGAGATCAATGGAGCGCGTACGGAAAAGATGGGGCCAGGTCC
ATAGATGACGATGGGGTTGTAAGGCTCCCAGGCACAGATACAGTTGGCAATTTTACACTGGAAGATGGTGTTGCTCCGGT
CCCATTTGTCGATATGGGAGTGCTAGGCAGCACTTCCGGATTCGGAATTGGTTTTATCTCGGACCACGTACTGCTTGACC
TTCAGCTGTCCGCAATGGAGAAGACTGGCAACGGTGAGGTTGTGTCCCAGCCGAAAGTCATGACGGCAGATAAGGAGACG
GCGAAGATATTGAAAGGCACGGAAGTACCGTATCAGGAGGCAAGTTCCAGCGGCGCGACTAGCACGTCTTTCAAAGAAGC
GGCCTTGTCGTTGGAGGTTACTCCCCAGATCACGCCCGACAATAGAATCATCATGGACGTAAAGGTCACCAAAGATGCGC
CCGATTTCCGTAACGCGATGAATGGTGTCCCTCCTATCGAGAAAAACGAGGTCAATGCTAAAATCTTGGTGAATGATGGA
GAAACGGTGGTTATCGGCGGTGTGTTCTCGAACAGCCAAACAAAAAGTGTCGATAAGGTTCCGTTCCTCGGCGATGTGCC
GTATCTAGGTCGTTTGTTCCGCCGCGATGTTGTGACGGATGCGAAATCTGAATTGCTGGTATTCTTAACGCCCAGGATCC
TGAATCATCAGGCCATTGCAGTGAATCGCTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

Secretin and TonB N terminus short domain (STN)

(300-346)

Bacterial type II and III secretion system protein (Secretin)

(538-694)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LTJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.529

100

0.747
  comQ Acinetobacter baylyi ADP1

43.001

98.578

0.424
  pilQ Acinetobacter baumannii strain A118

40

100

0.418
  pilQ Acinetobacter baumannii D1279779

40

100

0.418

Multiple sequence alignment