Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPX94_RS05540 | Genome accession | NZ_CP046848 |
| Coordinates | 1201268..1201858 (+) | Length | 196 a.a. |
| NCBI ID | WP_078926719.1 | Uniprot ID | A0A1T4QY50 |
| Organism | Vibrio cincinnatiensis strain F8054 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1196268..1206858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX94_RS05525 | - | 1197051..1199528 (-) | 2478 | WP_154115191.1 | PBP1A family penicillin-binding protein | - |
| GPX94_RS05530 | pilM | 1199670..1200692 (+) | 1023 | WP_154115192.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX94_RS05535 | pilN | 1200682..1201275 (+) | 594 | WP_154115193.1 | PilN domain-containing protein | Machinery gene |
| GPX94_RS05540 | pilO | 1201268..1201858 (+) | 591 | WP_078926719.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX94_RS05545 | pilP | 1201848..1202366 (+) | 519 | WP_078926718.1 | pilus assembly protein PilP | Machinery gene |
| GPX94_RS05550 | pilQ | 1202391..1204112 (+) | 1722 | WP_078926717.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPX94_RS05555 | aroK | 1204299..1204817 (+) | 519 | WP_078926716.1 | shikimate kinase AroK | - |
| GPX94_RS05560 | aroB | 1204845..1205936 (+) | 1092 | WP_154115194.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22807.14 Da Isoelectric Point: 4.9215
>NTDB_id=408871 GPX94_RS05540 WP_078926719.1 1201268..1201858(+) (pilO) [Vibrio cincinnatiensis strain F8054]
MTKAYDLDFDELMEWPRAAQLVVIALLIMVIQAAGYWFYLLPKQEGLEGLKQQEQTLKSTVRIKASKVAALPQLQTQLDE
LSDRYDFLLRQLPVQQELASMLASVNELGLKNSLTFTRIDWGEKLNQEFLYRLPLNIELTGNYHNIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKSEVKDEK
MTKAYDLDFDELMEWPRAAQLVVIALLIMVIQAAGYWFYLLPKQEGLEGLKQQEQTLKSTVRIKASKVAALPQLQTQLDE
LSDRYDFLLRQLPVQQELASMLASVNELGLKNSLTFTRIDWGEKLNQEFLYRLPLNIELTGNYHNIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKSEVKDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408871 GPX94_RS05540 WP_078926719.1 1201268..1201858(+) (pilO) [Vibrio cincinnatiensis strain F8054]
ATGACTAAAGCGTATGATTTAGATTTCGACGAGCTAATGGAGTGGCCAAGAGCGGCGCAGCTGGTGGTGATAGCGCTGCT
GATTATGGTGATTCAAGCTGCTGGTTATTGGTTTTATCTATTACCAAAGCAAGAAGGTCTGGAGGGGCTGAAGCAGCAAG
AGCAAACGCTAAAATCCACTGTCCGGATCAAGGCCAGTAAAGTGGCCGCGTTACCACAACTACAAACGCAATTAGATGAA
TTATCCGATCGCTATGATTTTTTGCTACGTCAACTCCCTGTACAGCAAGAGCTGGCCAGTATGTTAGCGTCGGTGAATGA
GTTGGGGCTAAAAAATTCTCTCACTTTTACCAGAATTGATTGGGGAGAAAAGCTGAACCAAGAGTTCCTATACCGTTTGC
CTCTCAATATCGAACTGACGGGAAATTATCACAATATTGGTGACTTTTCAGAAGCCATTGCCAAGCTGCCCCGAATTATT
AACTTTGATGATGTGGACTGGCAAAGGGTCAGTCAGGAAAGCAGTACCTTACACTTTAGGGTGCGTGCGTATACCTACCA
GTTTAAATCGGAGGTGAAAGATGAGAAGTAG
ATGACTAAAGCGTATGATTTAGATTTCGACGAGCTAATGGAGTGGCCAAGAGCGGCGCAGCTGGTGGTGATAGCGCTGCT
GATTATGGTGATTCAAGCTGCTGGTTATTGGTTTTATCTATTACCAAAGCAAGAAGGTCTGGAGGGGCTGAAGCAGCAAG
AGCAAACGCTAAAATCCACTGTCCGGATCAAGGCCAGTAAAGTGGCCGCGTTACCACAACTACAAACGCAATTAGATGAA
TTATCCGATCGCTATGATTTTTTGCTACGTCAACTCCCTGTACAGCAAGAGCTGGCCAGTATGTTAGCGTCGGTGAATGA
GTTGGGGCTAAAAAATTCTCTCACTTTTACCAGAATTGATTGGGGAGAAAAGCTGAACCAAGAGTTCCTATACCGTTTGC
CTCTCAATATCGAACTGACGGGAAATTATCACAATATTGGTGACTTTTCAGAAGCCATTGCCAAGCTGCCCCGAATTATT
AACTTTGATGATGTGGACTGGCAAAGGGTCAGTCAGGAAAGCAGTACCTTACACTTTAGGGTGCGTGCGTATACCTACCA
GTTTAAATCGGAGGTGAAAGATGAGAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.02 |
100 |
0.76 |
| pilO | Vibrio campbellii strain DS40M4 |
67.725 |
96.429 |
0.653 |