Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPX94_RS05545 Genome accession   NZ_CP046848
Coordinates   1201848..1202366 (+) Length   172 a.a.
NCBI ID   WP_078926718.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196848..1207366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS05525 - 1197051..1199528 (-) 2478 WP_154115191.1 PBP1A family penicillin-binding protein -
  GPX94_RS05530 pilM 1199670..1200692 (+) 1023 WP_154115192.1 type IV pilus assembly protein PilM Machinery gene
  GPX94_RS05535 pilN 1200682..1201275 (+) 594 WP_154115193.1 PilN domain-containing protein Machinery gene
  GPX94_RS05540 pilO 1201268..1201858 (+) 591 WP_078926719.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX94_RS05545 pilP 1201848..1202366 (+) 519 WP_078926718.1 pilus assembly protein PilP Machinery gene
  GPX94_RS05550 pilQ 1202391..1204112 (+) 1722 WP_078926717.1 type IV pilus secretin PilQ family protein Machinery gene
  GPX94_RS05555 aroK 1204299..1204817 (+) 519 WP_078926716.1 shikimate kinase AroK -
  GPX94_RS05560 aroB 1204845..1205936 (+) 1092 WP_154115194.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19179.99 Da        Isoelectric Point: 8.1199

>NTDB_id=408872 GPX94_RS05545 WP_078926718.1 1201848..1202366(+) (pilP) [Vibrio cincinnatiensis strain F8054]
MRSSLRFLGWLCPLLLVGCQANEDSLEDYLLEVELQTQREVAQLAPVVQFQAFHYGQHGKREPFVLPQEALVQNQSVTQS
DCWQPVPRSKTGTLERYPLNQLRLRGVMSSGGSISALVQTPSGTVVNVKAGQYLGLNNGRITRVADDYLLIKETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408872 GPX94_RS05545 WP_078926718.1 1201848..1202366(+) (pilP) [Vibrio cincinnatiensis strain F8054]
ATGAGAAGTAGCCTTAGATTTTTAGGCTGGCTATGCCCTTTGTTATTGGTTGGTTGTCAAGCCAATGAAGACTCTCTAGA
GGATTACTTACTTGAGGTGGAATTACAGACTCAAAGAGAAGTGGCTCAGCTTGCGCCTGTGGTTCAGTTTCAAGCCTTTC
ATTATGGACAACATGGCAAACGAGAACCGTTTGTCTTGCCCCAAGAAGCGCTAGTGCAAAATCAGTCGGTTACTCAGTCT
GACTGTTGGCAACCGGTACCTCGCAGTAAAACCGGAACGCTGGAACGTTATCCTCTCAATCAACTGCGTTTAAGAGGAGT
CATGAGTAGTGGAGGCAGTATCTCTGCCTTAGTTCAAACGCCGAGTGGAACGGTCGTCAATGTGAAAGCAGGGCAATACC
TCGGATTAAATAATGGACGAATCACTCGAGTTGCTGATGATTATCTATTGATAAAAGAAACCCTGCCTGATGGTTTAGGG
TGCTGGAATCAGCGTAATGTCAAATTGGCTTTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

70.122

95.349

0.669
  pilP Vibrio campbellii strain DS40M4

56.962

91.86

0.523

Multiple sequence alignment