Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPX94_RS05535 Genome accession   NZ_CP046848
Coordinates   1200682..1201275 (+) Length   197 a.a.
NCBI ID   WP_154115193.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1195682..1206275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS05520 oxyR 1196111..1197001 (+) 891 WP_078926723.1 DNA-binding transcriptional regulator OxyR -
  GPX94_RS05525 - 1197051..1199528 (-) 2478 WP_154115191.1 PBP1A family penicillin-binding protein -
  GPX94_RS05530 pilM 1199670..1200692 (+) 1023 WP_154115192.1 type IV pilus assembly protein PilM Machinery gene
  GPX94_RS05535 pilN 1200682..1201275 (+) 594 WP_154115193.1 PilN domain-containing protein Machinery gene
  GPX94_RS05540 pilO 1201268..1201858 (+) 591 WP_078926719.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX94_RS05545 pilP 1201848..1202366 (+) 519 WP_078926718.1 pilus assembly protein PilP Machinery gene
  GPX94_RS05550 pilQ 1202391..1204112 (+) 1722 WP_078926717.1 type IV pilus secretin PilQ family protein Machinery gene
  GPX94_RS05555 aroK 1204299..1204817 (+) 519 WP_078926716.1 shikimate kinase AroK -
  GPX94_RS05560 aroB 1204845..1205936 (+) 1092 WP_154115194.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22586.96 Da        Isoelectric Point: 9.7503

>NTDB_id=408870 GPX94_RS05535 WP_154115193.1 1200682..1201275(+) (pilN) [Vibrio cincinnatiensis strain F8054]
MLHNINLLPWREVQREAYRQHFIHLLILGVLLALGVQGGAGSYLEQQKQQQQGRLDFLNQHIRQLDERLHALKVTEQEHK
ALLTRLKVVEALQQKRNKSTDFMHLMPELIPEGVYVDKIKMNGQEVEMNGISDSTARLATMLDNLEKSPQLSAVGMHSIV
SGNRRFGKQFQSFKVSFLFHTSDQVVQKPAQKEASHD

Nucleotide


Download         Length: 594 bp        

>NTDB_id=408870 GPX94_RS05535 WP_154115193.1 1200682..1201275(+) (pilN) [Vibrio cincinnatiensis strain F8054]
ATGCTGCATAACATTAATTTGTTGCCGTGGCGAGAAGTACAGCGAGAAGCCTATCGGCAGCATTTCATCCATTTATTAAT
CTTAGGCGTACTTTTAGCGCTGGGCGTGCAAGGGGGGGCGGGAAGCTATCTAGAGCAGCAGAAGCAACAGCAGCAGGGGC
GACTGGATTTTCTTAACCAGCATATTCGCCAGTTAGATGAACGCCTTCATGCTTTAAAAGTGACAGAGCAAGAACATAAA
GCCTTATTAACCCGTTTAAAAGTGGTGGAGGCTTTGCAACAGAAACGCAATAAAAGTACTGACTTTATGCACCTGATGCC
GGAGTTAATTCCTGAAGGCGTCTATGTCGATAAAATCAAGATGAATGGGCAAGAGGTCGAAATGAACGGTATTAGCGATA
GTACCGCGCGTTTGGCAACCATGTTGGATAATTTGGAAAAATCGCCTCAGTTATCTGCAGTGGGAATGCACTCGATTGTG
TCGGGCAATCGTCGCTTTGGTAAGCAGTTTCAGAGTTTTAAAGTCTCTTTCCTCTTTCATACTTCCGATCAAGTGGTTCA
AAAGCCCGCTCAAAAGGAGGCTTCTCATGACTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

67.232

89.848

0.604
  pilN Vibrio campbellii strain DS40M4

63.128

90.863

0.574

Multiple sequence alignment