Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX94_RS05335 Genome accession   NZ_CP046848
Coordinates   1157481..1158488 (+) Length   335 a.a.
NCBI ID   WP_078927109.1    Uniprot ID   A0A1T4RQP9
Organism   Vibrio cincinnatiensis strain F8054     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152481..1163488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS05315 metJ 1152617..1152934 (+) 318 WP_078927113.1 met regulon transcriptional regulator MetJ -
  GPX94_RS05320 - 1152997..1154274 (-) 1278 WP_154115176.1 malic enzyme-like NAD(P)-binding protein -
  GPX94_RS05325 rpmE 1154529..1154747 (-) 219 WP_078927111.1 50S ribosomal protein L31 -
  GPX94_RS05330 priA 1154991..1157192 (+) 2202 WP_154115177.1 primosomal protein N' -
  GPX94_RS05335 cytR 1157481..1158488 (+) 1008 WP_078927109.1 DNA-binding transcriptional regulator CytR Regulator
  GPX94_RS05340 - 1158614..1159156 (+) 543 WP_078927108.1 SPOR domain-containing protein -
  GPX94_RS05345 hslV 1159395..1159949 (+) 555 WP_158147603.1 ATP-dependent protease subunit HslV -
  GPX94_RS05350 hslU 1159988..1161319 (+) 1332 WP_078927106.1 HslU--HslV peptidase ATPase subunit -
  GPX94_RS05355 - 1161409..1162326 (+) 918 WP_154115179.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX94_RS05360 rraA 1162402..1162917 (+) 516 WP_078927104.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36934.43 Da        Isoelectric Point: 6.3893

>NTDB_id=408868 GPX94_RS05335 WP_078927109.1 1157481..1158488(+) (cytR) [Vibrio cincinnatiensis strain F8054]
MATMKDVAQLAGVSTATVSRALMNPEKVSTSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQRKRESSFVNLVFTKQADGMLLLGADLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQISGPEGAVLCEFRQQGYQQALRRAGLTKNPSYHVVGDFTFDSGAKAVRQLLALSEPPTA
IFCHNDAMAIGAMQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
THLVVRESAAPPRIL

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=408868 GPX94_RS05335 WP_078927109.1 1157481..1158488(+) (cytR) [Vibrio cincinnatiensis strain F8054]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGTGTCTCTACCGCTACGGTATCTCGAGCGTTGATGAACCCAGAAAA
AGTCTCCACATCAACTCGTAAACGAGTGGAAGAGGCGGTTTTGGAAGCTGGCTATTCCCCTAATTCTTTAGCGCGTAATT
TGCGACGTAATGAATCCAAAACCATTGTGGCAATTGTTCCTGATATTTGCGATCCGTATTATACCGAGATCATCCGTGGC
ATTGAAGATGCCGCGATGGAACATGGTTACCTCGTATTATTGGGAGATAGTGGCCAACAGCGAAAAAGAGAAAGTTCCTT
TGTCAATTTGGTGTTCACCAAACAAGCGGACGGAATGTTATTGCTGGGGGCTGACTTACCTTTTGATGTCAGCAAATCAG
AACAAAAAAATCTGCCCCCCATGGTGATGGCATGTGAGTATGCTCCTGAACTTGAATTGCCGACGGTGCATATTGATAAC
CTGACCTCTGCGTTTGAAGCGGTTAACTATTTAACCCAAATGGGCCATAAACGTATTGCTCAGATCAGTGGTCCAGAAGG
GGCTGTTTTGTGTGAATTTCGTCAGCAAGGATATCAGCAGGCGTTACGTCGAGCTGGTTTGACAAAAAATCCTAGTTACC
ATGTGGTGGGGGATTTTACCTTTGATTCTGGTGCTAAAGCCGTTCGTCAGCTATTGGCTTTATCTGAGCCGCCGACCGCA
ATTTTCTGTCATAACGATGCAATGGCCATTGGTGCCATGCAAGAAGCCAAACGATTGGGGTTACGTGTTCCACAAGATTT
ATCGGTAGTGGGATTTGATGACATTCAGTTTGCCCAATATTGCGATCCACCGCTAACCACCATTTCACAGCCTCGCTATG
AGATTGGCCGTCAAGCCATGTTAATGATGTTAGAACTACTGCGTGGGCATGATGTGAGAGCAGGTTCTCGCTTGTTGGAA
ACGCATTTAGTGGTGAGAGAAAGTGCGGCACCACCAAGAATCTTATAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4RQP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.566

99.104

0.907
  cytR Vibrio parahaemolyticus RIMD 2210633

89.189

99.403

0.887

Multiple sequence alignment