Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY16_RS02140 | Genome accession | NZ_CP046832 |
| Coordinates | 443025..443615 (+) | Length | 196 a.a. |
| NCBI ID | WP_011079354.1 | Uniprot ID | A0A3Q0L3M6 |
| Organism | Vibrio vulnificus strain 06-2410 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 438025..448615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY16_RS02125 | - | 438792..441305 (-) | 2514 | WP_158104941.1 | penicillin-binding protein 1A | - |
| GPY16_RS02130 | pilM | 441445..442452 (+) | 1008 | WP_017419656.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY16_RS02135 | pilN | 442442..443032 (+) | 591 | WP_045629546.1 | PilN domain-containing protein | Machinery gene |
| GPY16_RS02140 | pilO | 443025..443615 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY16_RS02145 | pilP | 443605..444117 (+) | 513 | WP_038940290.1 | pilus assembly protein PilP | Machinery gene |
| GPY16_RS02150 | pilQ | 444131..445915 (+) | 1785 | WP_017419660.1 | type IV pilus secretin PilQ | Machinery gene |
| GPY16_RS02155 | aroK | 446117..446635 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| GPY16_RS02160 | aroB | 446668..447759 (+) | 1092 | WP_011079358.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22749.25 Da Isoelectric Point: 5.0836
>NTDB_id=408577 GPY16_RS02140 WP_011079354.1 443025..443615(+) (pilO) [Vibrio vulnificus strain 06-2410]
MASWQDLDIDEITDWPILPQAAVVVLLMLIIQGFGYWFYLKPETEVLQRMVTEEQTLKISARIKATKVAALPQLQSQLDE
LTQRYEFLLKQLPVQKELATMLASVNELGIQSKLTFTRIDWGEKQTKDFLYQLPLNIELTGDYHDIGEFSEAIARLPRII
SFTDVTWHRVSMESSTLHFRVKANTYQFKSEAVHEK
MASWQDLDIDEITDWPILPQAAVVVLLMLIIQGFGYWFYLKPETEVLQRMVTEEQTLKISARIKATKVAALPQLQSQLDE
LTQRYEFLLKQLPVQKELATMLASVNELGIQSKLTFTRIDWGEKQTKDFLYQLPLNIELTGDYHDIGEFSEAIARLPRII
SFTDVTWHRVSMESSTLHFRVKANTYQFKSEAVHEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408577 GPY16_RS02140 WP_011079354.1 443025..443615(+) (pilO) [Vibrio vulnificus strain 06-2410]
ATGGCTAGTTGGCAAGATCTCGATATCGATGAAATCACAGATTGGCCGATTTTACCGCAGGCGGCGGTTGTCGTGTTGCT
GATGTTGATCATTCAAGGTTTTGGCTATTGGTTCTATCTCAAGCCGGAAACGGAAGTGTTGCAAAGGATGGTCACAGAAG
AGCAAACGCTGAAAATCTCGGCTCGAATTAAGGCGACCAAAGTGGCGGCATTGCCGCAACTTCAATCGCAACTTGATGAA
CTGACTCAGCGCTATGAATTCTTACTTAAGCAACTTCCCGTGCAGAAAGAGTTGGCGACGATGCTAGCTTCGGTCAATGA
ACTCGGCATTCAAAGTAAGCTCACGTTTACACGTATTGATTGGGGGGAGAAGCAAACCAAGGATTTCCTTTACCAACTGC
CTTTGAATATTGAGTTAACCGGGGATTATCACGATATCGGTGAATTTTCTGAAGCGATTGCTCGCCTGCCTCGCATTATC
AGTTTTACCGATGTGACTTGGCATCGAGTGAGTATGGAAAGCAGCACCTTGCACTTCCGAGTAAAAGCGAACACCTATCA
GTTCAAGTCGGAGGCTGTCCATGAGAAGTAG
ATGGCTAGTTGGCAAGATCTCGATATCGATGAAATCACAGATTGGCCGATTTTACCGCAGGCGGCGGTTGTCGTGTTGCT
GATGTTGATCATTCAAGGTTTTGGCTATTGGTTCTATCTCAAGCCGGAAACGGAAGTGTTGCAAAGGATGGTCACAGAAG
AGCAAACGCTGAAAATCTCGGCTCGAATTAAGGCGACCAAAGTGGCGGCATTGCCGCAACTTCAATCGCAACTTGATGAA
CTGACTCAGCGCTATGAATTCTTACTTAAGCAACTTCCCGTGCAGAAAGAGTTGGCGACGATGCTAGCTTCGGTCAATGA
ACTCGGCATTCAAAGTAAGCTCACGTTTACACGTATTGATTGGGGGGAGAAGCAAACCAAGGATTTCCTTTACCAACTGC
CTTTGAATATTGAGTTAACCGGGGATTATCACGATATCGGTGAATTTTCTGAAGCGATTGCTCGCCTGCCTCGCATTATC
AGTTTTACCGATGTGACTTGGCATCGAGTGAGTATGGAAAGCAGCACCTTGCACTTCCGAGTAAAAGCGAACACCTATCA
GTTCAAGTCGGAGGCTGTCCATGAGAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
73.016 |
96.429 |
0.704 |
| pilO | Vibrio cholerae strain A1552 |
67.347 |
100 |
0.673 |