Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY16_RS02145 Genome accession   NZ_CP046832
Coordinates   443605..444117 (+) Length   170 a.a.
NCBI ID   WP_038940290.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 06-2410     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 438605..449117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS02125 - 438792..441305 (-) 2514 WP_158104941.1 penicillin-binding protein 1A -
  GPY16_RS02130 pilM 441445..442452 (+) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  GPY16_RS02135 pilN 442442..443032 (+) 591 WP_045629546.1 PilN domain-containing protein Machinery gene
  GPY16_RS02140 pilO 443025..443615 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY16_RS02145 pilP 443605..444117 (+) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  GPY16_RS02150 pilQ 444131..445915 (+) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  GPY16_RS02155 aroK 446117..446635 (+) 519 WP_011079357.1 shikimate kinase AroK -
  GPY16_RS02160 aroB 446668..447759 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19048.16 Da        Isoelectric Point: 10.2810

>NTDB_id=408578 GPY16_RS02145 WP_038940290.1 443605..444117(+) (pilP) [Vibrio vulnificus strain 06-2410]
MRSSLSLVAVLILLSGCRANTEPMEGFIRQVESEARQEMAKLQPEREYIPIDYLARENRRPFELPKEAVIASQPVVKKDC
WQPPSRAKNGKLERYPLSQLRLKGVMGSGNTIAGLVQTPQGKVEKVHPGQFIGQNNGKVTVVTPSYILINETLPDGLGCW
QQRKVRLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=408578 GPY16_RS02145 WP_038940290.1 443605..444117(+) (pilP) [Vibrio vulnificus strain 06-2410]
ATGAGAAGTAGTTTATCGCTCGTCGCTGTGCTGATCTTGCTATCGGGTTGTCGAGCGAATACCGAACCGATGGAAGGTTT
TATCCGCCAAGTTGAATCGGAAGCGCGTCAAGAAATGGCCAAGTTACAACCAGAGCGTGAGTACATCCCGATTGATTACT
TAGCTCGAGAAAATCGCCGTCCTTTTGAGTTACCTAAGGAAGCCGTGATTGCCTCTCAACCTGTCGTTAAGAAAGACTGC
TGGCAGCCACCATCGCGGGCTAAAAATGGCAAGTTGGAGCGCTATCCACTTAGCCAATTACGTCTGAAAGGGGTGATGGG
GAGTGGCAATACCATTGCCGGTCTCGTACAGACCCCTCAAGGCAAAGTGGAGAAAGTACACCCAGGGCAATTTATCGGCC
AGAACAATGGCAAAGTGACCGTAGTAACGCCGTCTTACATATTGATCAATGAAACCCTTCCTGATGGTTTAGGTTGCTGG
CAGCAACGTAAAGTCAGACTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

64.072

98.235

0.629
  pilP Vibrio cholerae strain A1552

59.375

94.118

0.559

Multiple sequence alignment