Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPY16_RS02135 Genome accession   NZ_CP046832
Coordinates   442442..443032 (+) Length   196 a.a.
NCBI ID   WP_045629546.1    Uniprot ID   A0AAW4HIH8
Organism   Vibrio vulnificus strain 06-2410     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437442..448032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS02120 oxyR 437824..438723 (+) 900 WP_045591363.1 DNA-binding transcriptional regulator OxyR -
  GPY16_RS02125 - 438792..441305 (-) 2514 WP_158104941.1 penicillin-binding protein 1A -
  GPY16_RS02130 pilM 441445..442452 (+) 1008 WP_017419656.1 type IV pilus assembly protein PilM Machinery gene
  GPY16_RS02135 pilN 442442..443032 (+) 591 WP_045629546.1 PilN domain-containing protein Machinery gene
  GPY16_RS02140 pilO 443025..443615 (+) 591 WP_011079354.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY16_RS02145 pilP 443605..444117 (+) 513 WP_038940290.1 pilus assembly protein PilP Machinery gene
  GPY16_RS02150 pilQ 444131..445915 (+) 1785 WP_017419660.1 type IV pilus secretin PilQ Machinery gene
  GPY16_RS02155 aroK 446117..446635 (+) 519 WP_011079357.1 shikimate kinase AroK -
  GPY16_RS02160 aroB 446668..447759 (+) 1092 WP_011079358.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22658.84 Da        Isoelectric Point: 7.2512

>NTDB_id=408576 GPY16_RS02135 WP_045629546.1 442442..443032(+) (pilN) [Vibrio vulnificus strain 06-2410]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSSFLQEVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=408576 GPY16_RS02135 WP_045629546.1 442442..443032(+) (pilN) [Vibrio vulnificus strain 06-2410]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACACAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCTTGATCGCGGTCGGTATTCAGTGGGGTATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATTCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATTCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAGCGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCAGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCAGGTATAAGCGATA
GTACCGCTCGACTCGCTACCATGTTGGATAATTTGGAACGTTCCTCCTTCCTGCAAGAAGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTCTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

67.956

92.347

0.628
  pilN Vibrio cholerae strain A1552

63.277

90.306

0.571

Multiple sequence alignment