Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GPY06_RS12460 Genome accession   NZ_CP046820
Coordinates   1451037..1452563 (-) Length   508 a.a.
NCBI ID   WP_055028233.1    Uniprot ID   A0A0Q0TFU7
Organism   Vibrio metoecus strain 2011V-1015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1446037..1457563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS12435 - 1446366..1446632 (+) 267 WP_000649656.1 YihD family protein -
  GPY06_RS12440 ccoG 1446894..1448318 (+) 1425 WP_000076157.1 cytochrome c oxidase accessory protein CcoG -
  GPY06_RS12445 - 1448366..1449352 (+) 987 WP_158120755.1 serine/threonine protein kinase -
  GPY06_RS12450 - 1449384..1449989 (+) 606 WP_055028232.1 thiol:disulfide interchange protein DsbA/DsbL -
  GPY06_RS12455 - 1450063..1450947 (-) 885 WP_158120149.1 acyltransferase -
  GPY06_RS12460 comM 1451037..1452563 (-) 1527 WP_055028233.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GPY06_RS12465 ilvG 1453096..1454742 (+) 1647 WP_046121246.1 acetolactate synthase 2 catalytic subunit -
  GPY06_RS12470 ilvM 1454754..1455038 (+) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  GPY06_RS12475 ilvE 1455050..1455988 (+) 939 WP_000201999.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55216.29 Da        Isoelectric Point: 8.2715

>NTDB_id=408366 GPY06_RS12460 WP_055028233.1 1451037..1452563(-) (comM) [Vibrio metoecus strain 2011V-1015]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLENYEFIGELALSGEIRGVKGVLPAALAANQVHRCLVVPHCNGDQAALVGSERHKSAQSL
LEVCADLCGQQNLSLFQSSPSVQEVSSHTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMS
DEEAMETASIASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPL
ESGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGD
RGESTAAVRQRVLLARTRMLERSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEA
QIARPHLAEALGYRSMDRLLKQLSAQNV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=408366 GPY06_RS12460 WP_055028233.1 1451037..1452563(-) (comM) [Vibrio metoecus strain 2011V-1015]
ATGGGACTTGCGATCATTCACAGCCGCGCCAGTATTGGTGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
TGGAATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCACGCGATCGAGTGCGTAGCGCAATCA
TCAATTCTCGATTTGAGTTTCCGGCGAAACGCATTACGGTCAACTTAGCCCCTGCTGATCTGCCTAAAGAGGGAGGGCGT
TTCGATCTTCCGATAGCACTCGGTATTTTGGCCGCCTCGGATCAAATTGCGCGAACTAAGCTGGAAAATTACGAATTTAT
TGGTGAACTGGCGCTATCGGGTGAAATTCGTGGTGTGAAAGGGGTGTTGCCTGCCGCGCTCGCGGCTAATCAAGTCCATC
GCTGTTTAGTGGTGCCACACTGTAATGGTGATCAGGCGGCGTTAGTCGGGAGTGAGCGGCATAAATCGGCGCAAAGCTTA
TTGGAAGTATGTGCCGATTTGTGTGGCCAGCAGAACCTGTCATTGTTTCAAAGTTCGCCCAGTGTGCAGGAAGTGAGTAG
TCATACGCGCGATCTGCAAGACATCATTGGTCAACAGCAAGGCAAACGTGCGTTGGAAATTGCTGCAGCTGGCAATCACA
ACCTGCTGTTTCTCGGCCCTCCCGGGACGGGGAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGT
GACGAAGAGGCGATGGAGACGGCCTCGATTGCCTCTCTCACTCAGCAAGAAATTAATCAACACAACTGGAAGTTGCGCCC
TTTTCGTTCTCCACACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTC
TCGCCCATAATGGGTTGTTGTTTTTGGACGAAATGCCGGAGTTTGAGCGCAAAGTGTTGGATTCACTGCGTGAACCGCTG
GAATCGGGTGAGATTGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCAGCGCGCTTTCAATTAGTCGGCGCGTTAAA
TCCAAGCCCCACGGGTTATTACGAAGGCAGTCAGGCGCGTGCTAATCCACAGAGTATTTTGCGCTATTTGAGTCGGCTCT
CTGGCCCCTTGTTGGATCGCTTTGATATGTCGATAGAGATCCCTGCGTTACCCAAAGGCACGCTTGCCAATGGGGGCGAT
CGTGGTGAATCGACGGCCGCTGTGCGTCAACGGGTATTACTTGCTCGAACGCGAATGCTAGAACGGTCTGGCAAGGTGAA
TGCTTTACTGCAAAGCCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTTTGGAAAGTGCGTTGC
ACCGCTTAGGCTTATCGATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGTACCATAGCGGATTTGCAAGGTGAAGCG
CAGATCGCTCGTCCACATTTGGCTGAGGCGTTGGGCTATCGCTCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAA
CGTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q0TFU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

97.047

100

0.97
  comM Vibrio campbellii strain DS40M4

85.039

100

0.85
  comM Haemophilus influenzae Rd KW20

67.061

99.803

0.669
  comM Glaesserella parasuis strain SC1401

63.953

100

0.65
  comM Legionella pneumophila str. Paris

50.503

97.835

0.494
  comM Legionella pneumophila strain ERS1305867

50.503

97.835

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.008

100

0.441

Multiple sequence alignment