Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPX95_RS08810 | Genome accession | NZ_CP046817 |
| Coordinates | 1915034..1915624 (+) | Length | 196 a.a. |
| NCBI ID | WP_000135851.1 | Uniprot ID | A0A067BH58 |
| Organism | Vibrio metoecus strain 06-2478 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1910034..1920624
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX95_RS08795 | - | 1910838..1913315 (-) | 2478 | WP_055027426.1 | penicillin-binding protein 1A | - |
| GPX95_RS08800 | pilM | 1913457..1914473 (+) | 1017 | WP_055032060.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX95_RS08805 | pilN | 1914463..1915041 (+) | 579 | WP_055032059.1 | PilN domain-containing protein | Machinery gene |
| GPX95_RS08810 | pilO | 1915034..1915624 (+) | 591 | WP_000135851.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX95_RS08815 | pilP | 1915614..1916132 (+) | 519 | WP_000794742.1 | pilus assembly protein PilP | Machinery gene |
| GPX95_RS08820 | pilQ | 1916158..1917873 (+) | 1716 | WP_199250716.1 | type IV pilus secretin PilQ | Machinery gene |
| GPX95_RS08825 | aroK | 1918060..1918584 (+) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| GPX95_RS08830 | aroB | 1918612..1919697 (+) | 1086 | WP_055030904.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22853.18 Da Isoelectric Point: 4.3574
>NTDB_id=408321 GPX95_RS08810 WP_000135851.1 1915034..1915624(+) (pilO) [Vibrio metoecus strain 06-2478]
MASFQELELDEMAEWPVLPQLLVILLLMLLVQGAGYWFYLMPKQDEIAALKQEEETVKATLRIKANKVAALPQIQAQLDE
LNERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQAQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDIDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
MASFQELELDEMAEWPVLPQLLVILLLMLLVQGAGYWFYLMPKQDEIAALKQEEETVKATLRIKANKVAALPQIQAQLDE
LNERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQAQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDIDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408321 GPX95_RS08810 WP_000135851.1 1915034..1915624(+) (pilO) [Vibrio metoecus strain 06-2478]
ATGGCTAGTTTTCAAGAGTTAGAACTGGACGAAATGGCAGAATGGCCGGTGTTACCCCAATTGCTGGTGATTTTGTTGCT
GATGCTATTGGTGCAAGGCGCAGGATACTGGTTTTATCTGATGCCCAAACAAGATGAGATCGCAGCACTCAAGCAAGAGG
AAGAAACCGTCAAAGCCACGTTACGCATCAAAGCAAACAAAGTGGCTGCTTTACCACAGATCCAAGCTCAATTGGATGAA
TTGAATGAGCGTTACGATTTCTTACTACGCCAACTACCAGTACAAAAAGAGCTAGCCAGTATGCTGGCATCGGTAAACCA
ACTTGGTCTGGATAATTCCCTAACATTTACTCGGATTGATTGGGGGGAGCGTCAGGCTCAAGAGTTTTTGTATCGCCTTC
CTCTCAATATTGAGCTGACTGGGAATTATCACGATATCGGAGATTTTTCCGAGGCAATCGCCAAGTTACCGCGGATTATC
AACTTCGATGACATCGATTGGCAGCGGGTTAGCCAAGAAAGTAGCACGCTGCATTTTCGGGTAAAAGCCTACACCTATCA
GTTTAAGCAGGAGGTGGAAGATGAAAAATAA
ATGGCTAGTTTTCAAGAGTTAGAACTGGACGAAATGGCAGAATGGCCGGTGTTACCCCAATTGCTGGTGATTTTGTTGCT
GATGCTATTGGTGCAAGGCGCAGGATACTGGTTTTATCTGATGCCCAAACAAGATGAGATCGCAGCACTCAAGCAAGAGG
AAGAAACCGTCAAAGCCACGTTACGCATCAAAGCAAACAAAGTGGCTGCTTTACCACAGATCCAAGCTCAATTGGATGAA
TTGAATGAGCGTTACGATTTCTTACTACGCCAACTACCAGTACAAAAAGAGCTAGCCAGTATGCTGGCATCGGTAAACCA
ACTTGGTCTGGATAATTCCCTAACATTTACTCGGATTGATTGGGGGGAGCGTCAGGCTCAAGAGTTTTTGTATCGCCTTC
CTCTCAATATTGAGCTGACTGGGAATTATCACGATATCGGAGATTTTTCCGAGGCAATCGCCAAGTTACCGCGGATTATC
AACTTCGATGACATCGATTGGCAGCGGGTTAGCCAAGAAAGTAGCACGCTGCATTTTCGGGTAAAAGCCTACACCTATCA
GTTTAAGCAGGAGGTGGAAGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
90.816 |
100 |
0.908 |
| pilO | Vibrio campbellii strain DS40M4 |
68.783 |
96.429 |
0.663 |