Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPX95_RS08815 Genome accession   NZ_CP046817
Coordinates   1915614..1916132 (+) Length   172 a.a.
NCBI ID   WP_000794742.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1910614..1921132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS08795 - 1910838..1913315 (-) 2478 WP_055027426.1 penicillin-binding protein 1A -
  GPX95_RS08800 pilM 1913457..1914473 (+) 1017 WP_055032060.1 type IV pilus assembly protein PilM Machinery gene
  GPX95_RS08805 pilN 1914463..1915041 (+) 579 WP_055032059.1 PilN domain-containing protein Machinery gene
  GPX95_RS08810 pilO 1915034..1915624 (+) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX95_RS08815 pilP 1915614..1916132 (+) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  GPX95_RS08820 pilQ 1916158..1917873 (+) 1716 WP_199250716.1 type IV pilus secretin PilQ Machinery gene
  GPX95_RS08825 aroK 1918060..1918584 (+) 525 WP_000818614.1 shikimate kinase AroK -
  GPX95_RS08830 aroB 1918612..1919697 (+) 1086 WP_055030904.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19265.44 Da        Isoelectric Point: 10.3195

>NTDB_id=408322 GPX95_RS08815 WP_000794742.1 1915614..1916132(+) (pilP) [Vibrio metoecus strain 06-2478]
MKNNRFWLPLMVMSLLVGCKANQDDLVGFVAQVERDARKDVSKLKPILEFQVTTYQERKAREPFVLPREALVQSQPVVKA
DCWQPMPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPTGNVVKVKAGQYLGNNNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408322 GPX95_RS08815 WP_000794742.1 1915614..1916132(+) (pilP) [Vibrio metoecus strain 06-2478]
ATGAAAAATAACCGGTTCTGGCTGCCACTGATGGTGATGTCGCTGTTGGTGGGATGCAAAGCGAACCAAGACGATTTGGT
GGGGTTTGTCGCTCAGGTTGAGCGGGATGCGCGTAAGGATGTCAGCAAACTCAAGCCGATTTTGGAATTTCAAGTGACGA
CTTACCAAGAGCGTAAAGCGCGTGAGCCGTTTGTGTTGCCCAGAGAAGCCTTGGTGCAAAGTCAACCTGTTGTTAAAGCC
GACTGTTGGCAGCCCATGCCTCGGGCGAAAAATGGTCCTCTGGAACGTTACCCACTCAGTCAATTACGCTTAAAAGGTGT
GATGAGTAGCGGTGGCTCCATTTCTGCGCTGGTTCAAACACCAACCGGTAATGTGGTGAAAGTAAAAGCAGGACAATATC
TAGGTAACAATAACGGAAAAGTAACCCGTGTTGATGATAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

81.977

100

0.82
  pilP Vibrio campbellii strain DS40M4

57.558

100

0.576

Multiple sequence alignment