Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H0A38_RS01820 Genome accession   NZ_CP059048
Coordinates   369200..370012 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain LAC460     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 364200..375012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS01795 (H0A38_01795) ytpR 364425..365051 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  H0A38_RS01800 (H0A38_01800) nox 365214..366554 (+) 1341 WP_023188995.1 H2O-forming NADH oxidase -
  H0A38_RS01805 (H0A38_01805) - 366644..367033 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  H0A38_RS01810 (H0A38_01810) groES 367153..367437 (+) 285 WP_003131589.1 co-chaperone GroES -
  H0A38_RS01815 (H0A38_01815) groL 367525..369153 (+) 1629 WP_003131585.1 chaperonin GroEL -
  H0A38_RS01820 (H0A38_01820) vicX 369200..370012 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  H0A38_RS01825 (H0A38_01825) vicK 370181..371623 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  H0A38_RS01830 (H0A38_01830) yycF 371616..372317 (-) 702 WP_003131580.1 response regulator YycF -
  H0A38_RS01835 (H0A38_01835) tmk 372495..373130 (+) 636 WP_015425847.1 dTMP kinase -
  H0A38_RS01840 (H0A38_01840) - 373263..374123 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  H0A38_RS01845 (H0A38_01845) yaaT 374175..374957 (+) 783 WP_129881413.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=408320 H0A38_RS01820 WP_003131583.1 369200..370012(-) (vicX) [Lactococcus lactis strain LAC460]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=408320 H0A38_RS01820 WP_003131583.1 369200..370012(-) (vicX) [Lactococcus lactis strain LAC460]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACCCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAGGGGATTGGTGTTTTAGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATACTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685

Multiple sequence alignment