Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPX87_RS04940 | Genome accession | NZ_CP046815 |
| Coordinates | 1045624..1046214 (-) | Length | 196 a.a. |
| NCBI ID | WP_078926719.1 | Uniprot ID | A0A1T4QY50 |
| Organism | Vibrio cincinnatiensis strain 1398-82 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1040624..1051214
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPX87_RS04920 | aroB | 1041546..1042637 (-) | 1092 | WP_078926715.1 | 3-dehydroquinate synthase | - |
| GPX87_RS04925 | aroK | 1042665..1043183 (-) | 519 | WP_078926716.1 | shikimate kinase AroK | - |
| GPX87_RS04930 | pilQ | 1043370..1045091 (-) | 1722 | WP_078926717.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GPX87_RS04935 | pilP | 1045116..1045634 (-) | 519 | WP_078926718.1 | pilus assembly protein PilP | Machinery gene |
| GPX87_RS04940 | pilO | 1045624..1046214 (-) | 591 | WP_078926719.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPX87_RS04945 | pilN | 1046207..1046800 (-) | 594 | WP_078926720.1 | PilN domain-containing protein | Machinery gene |
| GPX87_RS04950 | pilM | 1046790..1047812 (-) | 1023 | WP_078926721.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPX87_RS04955 | - | 1047954..1050431 (+) | 2478 | WP_078926722.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22807.14 Da Isoelectric Point: 4.9215
>NTDB_id=408263 GPX87_RS04940 WP_078926719.1 1045624..1046214(-) (pilO) [Vibrio cincinnatiensis strain 1398-82]
MTKAYDLDFDELMEWPRAAQLVVIALLIMVIQAAGYWFYLLPKQEGLEGLKQQEQTLKSTVRIKASKVAALPQLQTQLDE
LSDRYDFLLRQLPVQQELASMLASVNELGLKNSLTFTRIDWGEKLNQEFLYRLPLNIELTGNYHNIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKSEVKDEK
MTKAYDLDFDELMEWPRAAQLVVIALLIMVIQAAGYWFYLLPKQEGLEGLKQQEQTLKSTVRIKASKVAALPQLQTQLDE
LSDRYDFLLRQLPVQQELASMLASVNELGLKNSLTFTRIDWGEKLNQEFLYRLPLNIELTGNYHNIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKSEVKDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408263 GPX87_RS04940 WP_078926719.1 1045624..1046214(-) (pilO) [Vibrio cincinnatiensis strain 1398-82]
ATGACTAAAGCGTATGATTTAGATTTCGACGAGCTAATGGAGTGGCCAAGAGCGGCGCAGCTGGTGGTGATAGCGCTGCT
GATTATGGTGATTCAAGCTGCTGGTTATTGGTTTTATCTATTACCAAAGCAAGAAGGCCTGGAGGGGCTGAAGCAGCAAG
AGCAAACGCTAAAATCCACTGTCCGGATTAAGGCCAGTAAAGTGGCCGCGTTACCACAGCTACAAACGCAATTAGATGAA
TTATCCGATCGCTATGATTTTTTGCTACGTCAACTCCCTGTACAGCAAGAGCTGGCCAGTATGTTAGCGTCGGTGAATGA
GTTGGGGCTAAAAAATTCTCTCACTTTCACCAGAATTGATTGGGGAGAAAAGCTGAACCAAGAGTTCCTATACCGTTTGC
CTCTCAATATCGAACTGACGGGAAATTATCACAATATTGGTGACTTTTCAGAAGCCATTGCCAAGCTGCCCCGAATTATT
AACTTTGATGATGTGGACTGGCAAAGGGTCAGTCAGGAAAGCAGTACCTTACACTTTAGGGTTCGTGCGTATACCTACCA
GTTTAAATCGGAGGTGAAAGATGAGAAGTAG
ATGACTAAAGCGTATGATTTAGATTTCGACGAGCTAATGGAGTGGCCAAGAGCGGCGCAGCTGGTGGTGATAGCGCTGCT
GATTATGGTGATTCAAGCTGCTGGTTATTGGTTTTATCTATTACCAAAGCAAGAAGGCCTGGAGGGGCTGAAGCAGCAAG
AGCAAACGCTAAAATCCACTGTCCGGATTAAGGCCAGTAAAGTGGCCGCGTTACCACAGCTACAAACGCAATTAGATGAA
TTATCCGATCGCTATGATTTTTTGCTACGTCAACTCCCTGTACAGCAAGAGCTGGCCAGTATGTTAGCGTCGGTGAATGA
GTTGGGGCTAAAAAATTCTCTCACTTTCACCAGAATTGATTGGGGAGAAAAGCTGAACCAAGAGTTCCTATACCGTTTGC
CTCTCAATATCGAACTGACGGGAAATTATCACAATATTGGTGACTTTTCAGAAGCCATTGCCAAGCTGCCCCGAATTATT
AACTTTGATGATGTGGACTGGCAAAGGGTCAGTCAGGAAAGCAGTACCTTACACTTTAGGGTTCGTGCGTATACCTACCA
GTTTAAATCGGAGGTGAAAGATGAGAAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.02 |
100 |
0.76 |
| pilO | Vibrio campbellii strain DS40M4 |
67.725 |
96.429 |
0.653 |