Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPX87_RS04935 Genome accession   NZ_CP046815
Coordinates   1045116..1045634 (-) Length   172 a.a.
NCBI ID   WP_078926718.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1040116..1050634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS04920 aroB 1041546..1042637 (-) 1092 WP_078926715.1 3-dehydroquinate synthase -
  GPX87_RS04925 aroK 1042665..1043183 (-) 519 WP_078926716.1 shikimate kinase AroK -
  GPX87_RS04930 pilQ 1043370..1045091 (-) 1722 WP_078926717.1 type IV pilus secretin PilQ family protein Machinery gene
  GPX87_RS04935 pilP 1045116..1045634 (-) 519 WP_078926718.1 pilus assembly protein PilP Machinery gene
  GPX87_RS04940 pilO 1045624..1046214 (-) 591 WP_078926719.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPX87_RS04945 pilN 1046207..1046800 (-) 594 WP_078926720.1 PilN domain-containing protein Machinery gene
  GPX87_RS04950 pilM 1046790..1047812 (-) 1023 WP_078926721.1 type IV pilus assembly protein PilM Machinery gene
  GPX87_RS04955 - 1047954..1050431 (+) 2478 WP_078926722.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19179.99 Da        Isoelectric Point: 8.1199

>NTDB_id=408262 GPX87_RS04935 WP_078926718.1 1045116..1045634(-) (pilP) [Vibrio cincinnatiensis strain 1398-82]
MRSSLRFLGWLCPLLLVGCQANEDSLEDYLLEVELQTQREVAQLAPVVQFQAFHYGQHGKREPFVLPQEALVQNQSVTQS
DCWQPVPRSKTGTLERYPLNQLRLRGVMSSGGSISALVQTPSGTVVNVKAGQYLGLNNGRITRVADDYLLIKETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408262 GPX87_RS04935 WP_078926718.1 1045116..1045634(-) (pilP) [Vibrio cincinnatiensis strain 1398-82]
ATGAGAAGTAGCCTTAGATTTTTAGGCTGGCTATGCCCTTTGTTATTGGTTGGTTGTCAAGCCAATGAAGACTCTCTAGA
GGATTACTTACTTGAGGTGGAATTACAGACTCAAAGAGAAGTGGCTCAGCTTGCGCCTGTGGTTCAGTTTCAAGCCTTTC
ATTATGGACAACATGGCAAACGAGAACCGTTTGTCTTGCCCCAAGAAGCGCTAGTACAAAATCAGTCGGTTACTCAGTCT
GACTGTTGGCAACCGGTACCTCGCAGTAAAACCGGAACGCTGGAACGTTATCCTCTCAATCAACTGCGTTTAAGAGGAGT
CATGAGTAGTGGAGGCAGTATCTCTGCCTTAGTTCAAACGCCGAGTGGAACGGTCGTCAATGTGAAAGCAGGGCAATACC
TCGGATTAAATAATGGACGAATCACTCGAGTTGCTGATGATTATCTATTGATAAAAGAAACCCTGCCTGATGGCTTAGGG
TGCTGGAATCAGCGTAATGTCAAATTGGCTTTGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

70.122

95.349

0.669
  pilP Vibrio campbellii strain DS40M4

56.962

91.86

0.523

Multiple sequence alignment